Detail information of GWHGAAZE008181


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrABF59999.11.0401E-32lipoxygenase 6 [Actinidia deliciosa]
Swissprottr|O24370|LOX21_SOLTU2E-28Linoleate 13S-lipoxygenase 2-1, chloroplastic (Precursor)
trEMBLtr|Q0ZDG4|Q0ZDG4_ACTDE4E-33Lipoxygenase 6 {ECO:0000313|EMBL:ABF59999.1} (Fragment)
TAIR10AT1G17420.18E-15lipoxygenase 3

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene6422121364222931-
GWHAAZE00000002mRNA6422121364222931-
GWHAAZE00000002exon6422121364221529-
GWHAAZE00000002exon6422249064222931-
GWHAAZE00000002CDS6422249064222931-
GWHAAZE00000002CDS6422121364221529-
Transcript Sequence

Network for GWHGAAZE008181

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01477.24PLAT1702333.70E-08
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K00454LOX2S Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Linoleic acid metabolismmap00591
alpha-Linolenic acid metabolismmap00592

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.863
SRR3591706second leaf1.588
SRR3591707mature leaf0.285
SRR3591708Shoot apex2.823
SRR3591709Stem1.148
SRR3591710White floral bud21.130
SRR3591711White flower18.598
SRR3591712Green floral bud25.084
SRR3591713Yellow flower8.668
SRP173429 SRR8316895Juvenile bud stage 25.859
SRR8316896Juvenile bud stage 36.308
SRR8316897Juvenile bud stage 4.860
SRR8316894Third green stage 13.500
SRR8316900Third green stage 12.588
SRR8316901Third green stage 9.035
SRR8316898Complete white stage 0.815
SRR8316899Complete white stage 0.687
SRR8316903Complete white stage 2.389
SRR8316902Silver flowering stage1.348
SRR8316904Silver flowering stage1.291
SRR8316905Silver flowering stage0.596
SRR8316906Gold flowering stage 0.733
SRR8316907Gold flowering stage 1.453
SRR8316908Gold flowering stage 0.155
SRP132670SRR6706286Control23.972
SRR6706287Light intensity 50%16.419
SRR6706288Light intensity 20%13.523
CNP0000432CNS0095592Slightly white alabastrum(diploid) 13.623
CNS0095593Slightly white alabastrum(diploid) 20.566
CNS0095594Slightly white alabastrum(diploid) 31.362
CNS0095595Whole white alabastrum(diploid) 20.801
CNS0095596Whole white alabastrum(diploid) 30.892
CNS0095597Whole white alabastrum(diploid) 40.365
CNS0095598Silvery flower (diploied) 15.147
CNS0095599Silvery flower (diploied) 22.312
CNS0095600Silvery flower (diploied) 31.589
CNS0095601Golden flower (diploid) 11.754
CNS0095602Golden flower (diploid) 23.054
CNS0095603Golden flower (diploid) 33.897
CNS0095604Slightly white alabastrum(tetraploid) 11.318
CNS0095605Slightly white alabastrum(tetraploid) 21.815
CNS0095606Slightly white alabastrum(tetraploid) 312.612
CNS0095607Whole white alabastrum(tetraploid) 10.126
CNS0095608Whole white alabastrum(tetraploid) 20.000
CNS0095609Whole white alabastrum(tetraploid) 33.191
CNS0095610Silvery flower (tetraploid) 10.942
CNS0095611Silvery flower (tetraploid) 21.410
CNS0095612Silvery flower (tetraploid) 31.755
CNS0095613Golden flower (tetraploid) 10.165
CNS0095614Golden flower (tetraploid) 20.323
CNS0095615Golden flower (tetraploid) 32.332
CRA001975CRR073297Stem 123.981
CRR073298Stem 224.633
CRR073299Stem 314.861
CRR073300Leaf 12.135
CRR073301Leaf 22.637
CRR073302Leaf 31.900
CRR073303Juvenile bud 10.057
CRR073304Juvenile bud 21.773
CRR073305Juvenile bud 30.705
CRR073306Third green 10.184
CRR073307Third green 20.038
CRR073308Third green 30.184
CRR073309Second white 10.169
CRR073310Second white 20.215
CRR073311Second white 30.191
CRR073312Silver flowering 10.008
CRR073313Silver flowering 20.016
CRR073314Silver flowering 30.000
CRR073315Gold flowering 10.000
CRR073316Gold flowering 20.000
CRR073317Gold flowering 30.000
CRR073318Tawny withering 10.000
CRR073319Tawny withering 20.000
CRR073320Tawny withering 30.000