Detail information of GWHGAAZE008176


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrADO51752.10lipoxygenase [Camellia sinensis]
Swissprottr|O24370|LOX21_SOLTU0Linoleate 13S-lipoxygenase 2-1, chloroplastic (Precursor)
trEMBLtr|E3UIM5|E3UIM5_CAMSI0Lipoxygenase {ECO:0000256|RuleBase:RU003975}
TAIR10AT3G45140.10lipoxygenase 2

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene6403972364054539-
GWHAAZE00000002mRNA6403972364054539-
GWHAAZE00000002exon6405452664054539-
GWHAAZE00000002exon6405368364053900-
GWHAAZE00000002exon6405229864052419-
GWHAAZE00000002exon6405157864051815-
GWHAAZE00000002exon6405109364051380-
GWHAAZE00000002exon6405078764050872-
GWHAAZE00000002exon6405032764050437-
GWHAAZE00000002exon6404378664044087-
GWHAAZE00000002exon6404203364042296-
GWHAAZE00000002exon6404067464041014-
GWHAAZE00000002exon6403972364040009-
GWHAAZE00000002CDS6405452664054539-
GWHAAZE00000002CDS6405368364053900-
GWHAAZE00000002CDS6405229864052419-
GWHAAZE00000002CDS6405157864051815-
GWHAAZE00000002CDS6405109364051380-
GWHAAZE00000002CDS6405078764050872-
GWHAAZE00000002CDS6405032764050437-
GWHAAZE00000002CDS6404378664044087-
GWHAAZE00000002CDS6404203364042296-
GWHAAZE00000002CDS6404067464041014-
GWHAAZE00000002CDS6403972364040009-
Transcript Sequence

Network for GWHGAAZE008176

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00305.20Lipoxygenase1296622.40E-244
PF00305.20Lipoxygenase6617391.50E-20
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K00454LOX2S Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Linoleic acid metabolismmap00591
alpha-Linolenic acid metabolismmap00592

Gene Ontology

GO term OntologyName
GO:0055114biological_processoxidation-reduction process
GO:0016702molecular_functionoxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen
GO:0046872molecular_functionmetal ion binding
GO:0005515molecular_functionprotein binding
GO:0016491molecular_functionoxidoreductase activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.018
SRR3591706second leaf0.017
SRR3591707mature leaf0.000
SRR3591708Shoot apex0.058
SRR3591709Stem0.052
SRR3591710White floral bud7.701
SRR3591711White flower4.264
SRR3591712Green floral bud4.884
SRR3591713Yellow flower27.571
SRP173429 SRR8316895Juvenile bud stage 0.052
SRR8316896Juvenile bud stage 0.098
SRR8316897Juvenile bud stage 0.002
SRR8316894Third green stage 0.041
SRR8316900Third green stage 0.042
SRR8316901Third green stage 0.063
SRR8316898Complete white stage 0.202
SRR8316899Complete white stage 3.063
SRR8316903Complete white stage 0.569
SRR8316902Silver flowering stage0.082
SRR8316904Silver flowering stage0.165
SRR8316905Silver flowering stage0.017
SRR8316906Gold flowering stage 0.175
SRR8316907Gold flowering stage 0.219
SRR8316908Gold flowering stage 0.000
SRP132670SRR6706286Control19.257
SRR6706287Light intensity 50%20.349
SRR6706288Light intensity 20%11.913
CNP0000432CNS0095592Slightly white alabastrum(diploid) 13.830
CNS0095593Slightly white alabastrum(diploid) 24.577
CNS0095594Slightly white alabastrum(diploid) 31.812
CNS0095595Whole white alabastrum(diploid) 20.318
CNS0095596Whole white alabastrum(diploid) 30.216
CNS0095597Whole white alabastrum(diploid) 41.249
CNS0095598Silvery flower (diploied) 12.325
CNS0095599Silvery flower (diploied) 21.126
CNS0095600Silvery flower (diploied) 31.173
CNS0095601Golden flower (diploid) 10.168
CNS0095602Golden flower (diploid) 20.344
CNS0095603Golden flower (diploid) 30.711
CNS0095604Slightly white alabastrum(tetraploid) 10.033
CNS0095605Slightly white alabastrum(tetraploid) 20.018
CNS0095606Slightly white alabastrum(tetraploid) 30.061
CNS0095607Whole white alabastrum(tetraploid) 10.005
CNS0095608Whole white alabastrum(tetraploid) 20.000
CNS0095609Whole white alabastrum(tetraploid) 30.013
CNS0095610Silvery flower (tetraploid) 10.000
CNS0095611Silvery flower (tetraploid) 20.017
CNS0095612Silvery flower (tetraploid) 30.003
CNS0095613Golden flower (tetraploid) 10.000
CNS0095614Golden flower (tetraploid) 20.007
CNS0095615Golden flower (tetraploid) 30.000
CRA001975CRR073297Stem 10.370
CRR073298Stem 20.205
CRR073299Stem 30.100
CRR073300Leaf 10.235
CRR073301Leaf 20.785
CRR073302Leaf 30.131
CRR073303Juvenile bud 10.006
CRR073304Juvenile bud 20.114
CRR073305Juvenile bud 30.085
CRR073306Third green 11.072
CRR073307Third green 20.326
CRR073308Third green 30.425
CRR073309Second white 10.000
CRR073310Second white 20.000
CRR073311Second white 30.051
CRR073312Silver flowering 10.003
CRR073313Silver flowering 20.000
CRR073314Silver flowering 30.006
CRR073315Gold flowering 10.063
CRR073316Gold flowering 20.000
CRR073317Gold flowering 32.763
CRR073318Tawny withering 10.000
CRR073319Tawny withering 20.044
CRR073320Tawny withering 30.000