Gene detail

Detail information of GWHGAAZE008168

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_004250878.1	0	PREDICTED: signal recognition particle subunit SRP72 [Solanum lycopersicum]
trEMBL	tr\|K4D938\|K4D938_SOLLC	0	Signal recognition particle subunit SRP72 {ECO:0000256\|PIRNR:PIRNR038922}
TAIR10	AT1G67680.1	3E-174	SRP72 RNA-binding domain

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	63307051	63313265	+
GWHAAZE00000002	mRNA	63307051	63313265	+
GWHAAZE00000002	exon	63307051	63307295	+
GWHAAZE00000002	exon	63310637	63310733	+
GWHAAZE00000002	exon	63310814	63311101	+
GWHAAZE00000002	exon	63312271	63312887	+
GWHAAZE00000002	exon	63312980	63313265	+
GWHAAZE00000002	CDS	63307051	63307295	+
GWHAAZE00000002	CDS	63310637	63310733	+
GWHAAZE00000002	CDS	63310814	63311101	+
GWHAAZE00000002	CDS	63312271	63312887	+
GWHAAZE00000002	CDS	63312980	63313265	+

Transcript Sequence
>GWHTAAZE008176 ATGGGAAAAGTAGATGCTTCTCTGGATATTTATCAAAAGCTCCTCAAATCCAAGATAGACTCAATGGAGATAAATGTTGTTGCTGATTTGGTTTCTCTTGGGAGGTCTTCTGAAGTGCAAGGAATGCTGGACTCACTCAAGCTTAAACCAACTAGTAGTTTTGAGTTAGCATATAATGTCGCTTGTGCATTAATTGAAAGGAACAAGCTTACAGAAGCAGAGCAACTTCTACTTTCAGCGCGAAGAATTGGTCAGGAAAATTTAATGGAGGAGGAATTTGCTGAGGATGACATAGAAATTGAATTGGCACCAATAGCTGTCCAGTTGGCATATGTTCAGCAACTTATGGGACACACACAAGAAGCTGTACAATCTTACACAGACATTATCAAGAAAAATCTGGCAGATGAACCATCAGTTGCAGTGGCAATAAATAACCTTATTGCATTAAAGGGTCCTAAAGATATATCGGATAGCTTACGGAAGCTTGATCGGCTGACAGAGAAAGGTAGTGGGCCACATAATTTCCAGCTTGCTCGTGGACTTGACTTGAAGCTTTCGGCAAAACAAAGGGAAACTATATATGCCAATCGGTTGCTGCTACTGCTTCATTCAAATAAGATGGATCAGGCTCGGGAACTGGTTGCTTCCCTACCAGACATGTTTCCAGACAGTGTGATGCCAATACTGCTTCAAGCTGCAGTCTTAGTGAGAGAAAACAAAGCCACAAAAGCCGAAGAAATACTTGGACAATTTGCTGACAAGTTTCCTGACAAGTCCAAGATTGTCCTCCTCGCACGGTCTCAGGTTGCCGCAGCTGCCAATCATCCTCAAATTGCAGCCGAATCTCTAACCAAAATCCCGGATATTCAGCACATGCCTGCGACGGTGGCAACCCTCGTATCCCTCAAAGAACGTGCGGGAGATATCGATGGTGCTGATTCAATCTTCCAATCTGCAATCCAATGGTGGTCAAATGCCATGACTGAAGACAATAACTTGGCTGTCATCATGCAAGAGGCAGCAGCTTTTAAGCTCAAGCACGGCCGGAAAGAAGAGGCTGCCCGTTTGTACGAGGAGCTTGTTAAAAATAGCCATAATAGTATTGAGGCACTTGTGGGGCTAATTCGTACCAGTGCTCTTACTGACATTGAAAAGGCCGAATCTTATGAGAAAAAGCTCAAACCACTCCCCGGTTTGAAAACAGTTGATGTTGATAGTTTGGAGAAAACTTCGGTGCAAAGCATGTACCCGAAAGGGTTCGACCCTGCAAACCCGGGCCCACCGCCGGACCCGGAGAGGTGGCTACCAAAGAGGGAGCGATCGAGTTATAGGCCAAAGAGGAAGGATAAGAGGGCAGCTCAGATAAGAGGTTCTCAGGGTGCTGTTAGTAAAGAGGCGAATGCTAATGCTGTGAATGCGAAATCGAGCCAGGCAAGTAATAGTTCAAAAGGAGGGGCGCAGAGTTCGGCAGCTGCGGAGCAGTCGAAGCCTTCTTCATCCAAGTCGTCGAAAAAGAAGTCGAGGAGGTAA

Network for GWHGAAZE008168

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08492.13	SRP72	415	446	2.50E-11

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K03108	SRP72	Protein export	map03060

Gene Ontology

GO term	Ontology	Name
GO:0006614	biological_process	SRP-dependent cotranslational protein targeting to membrane
GO:0048500	cellular_component	signal recognition particle
GO:0005515	molecular_function	protein binding
GO:0008312	molecular_function	7S RNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	44.847
	SRR3591706	second leaf	24.952
	SRR3591707	mature leaf	13.551
	SRR3591708	Shoot apex	44.817
	SRR3591709	Stem	33.097
	SRR3591710	White floral bud	36.555
	SRR3591711	White flower	38.243
	SRR3591712	Green floral bud	49.591
	SRR3591713	Yellow flower	31.058
SRP173429	SRR8316895	Juvenile bud stage	27.168
	SRR8316896	Juvenile bud stage	48.132
	SRR8316897	Juvenile bud stage	22.955
	SRR8316894	Third green stage	18.499
	SRR8316900	Third green stage	51.885
	SRR8316901	Third green stage	58.787
	SRR8316898	Complete white stage	13.178
	SRR8316899	Complete white stage	42.752
	SRR8316903	Complete white stage	29.490
	SRR8316902	Silver flowering stage	16.386
	SRR8316904	Silver flowering stage	22.405
	SRR8316905	Silver flowering stage	10.423
	SRR8316906	Gold flowering stage	30.724
	SRR8316907	Gold flowering stage	31.751
	SRR8316908	Gold flowering stage	34.744
SRP132670	SRR6706286	Control	48.064
	SRR6706287	Light intensity 50%	47.023
	SRR6706288	Light intensity 20%	47.370
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	42.597
	CNS0095593	Slightly white alabastrum(diploid) 2	47.243
	CNS0095594	Slightly white alabastrum(diploid) 3	44.754
	CNS0095595	Whole white alabastrum(diploid) 2	47.496
	CNS0095596	Whole white alabastrum(diploid) 3	49.756
	CNS0095597	Whole white alabastrum(diploid) 4	40.873
	CNS0095598	Silvery flower (diploied) 1	28.614
	CNS0095599	Silvery flower (diploied) 2	26.216
	CNS0095600	Silvery flower (diploied) 3	39.865
	CNS0095601	Golden flower (diploid) 1	20.790
	CNS0095602	Golden flower (diploid) 2	35.030
	CNS0095603	Golden flower (diploid) 3	32.801
	CNS0095604	Slightly white alabastrum(tetraploid) 1	50.969
	CNS0095605	Slightly white alabastrum(tetraploid) 2	42.030
	CNS0095606	Slightly white alabastrum(tetraploid) 3	53.883
	CNS0095607	Whole white alabastrum(tetraploid) 1	39.933
	CNS0095608	Whole white alabastrum(tetraploid) 2	36.678
	CNS0095609	Whole white alabastrum(tetraploid) 3	52.579
	CNS0095610	Silvery flower (tetraploid) 1	35.135
	CNS0095611	Silvery flower (tetraploid) 2	27.704
	CNS0095612	Silvery flower (tetraploid) 3	29.624
	CNS0095613	Golden flower (tetraploid) 1	17.973
	CNS0095614	Golden flower (tetraploid) 2	30.206
	CNS0095615	Golden flower (tetraploid) 3	26.312
CRA001975	CRR073297	Stem 1	45.945
	CRR073298	Stem 2	46.020
	CRR073299	Stem 3	46.751
	CRR073300	Leaf 1	47.351
	CRR073301	Leaf 2	53.237
	CRR073302	Leaf 3	42.061
	CRR073303	Juvenile bud 1	46.739
	CRR073304	Juvenile bud 2	39.071
	CRR073305	Juvenile bud 3	47.060
	CRR073306	Third green 1	25.252
	CRR073307	Third green 2	22.888
	CRR073308	Third green 3	25.347
	CRR073309	Second white 1	19.539
	CRR073310	Second white 2	20.063
	CRR073311	Second white 3	17.867
	CRR073312	Silver flowering 1	16.261
	CRR073313	Silver flowering 2	18.737
	CRR073314	Silver flowering 3	19.308
	CRR073315	Gold flowering 1	11.754
	CRR073316	Gold flowering 2	14.610
	CRR073317	Gold flowering 3	10.183
	CRR073318	Tawny withering 1	44.487
	CRR073319	Tawny withering 2	35.580
	CRR073320	Tawny withering 3	53.375