Gene detail

Detail information of GWHGAAZE008166

Functional Annotation

Database	Orthologs	Annotation
Nr	AEY85033.1	xanthine dehydrogenase [Camellia sinensis]
Swissprot	tr\|Q8GUQ8\|XDH1_ARATH	Xanthine dehydrogenase 1
trEMBL	tr\|H6UJ41\|H6UJ41_CAMSI	Xanthine dehydrogenase {ECO:0000313\|EMBL:AEY85033.1}
TAIR10	AT4G34890.1	xanthine dehydrogenase 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	63224997	63251282	+
GWHAAZE00000002	mRNA	63224997	63251282	+
GWHAAZE00000002	exon	63224997	63225087	+
GWHAAZE00000002	exon	63226976	63227075	+
GWHAAZE00000002	exon	63227853	63227961	+
GWHAAZE00000002	exon	63228321	63229823	+
GWHAAZE00000002	exon	63232048	63232290	+
GWHAAZE00000002	exon	63233132	63233446	+
GWHAAZE00000002	exon	63235150	63235314	+
GWHAAZE00000002	exon	63235970	63236254	+
GWHAAZE00000002	exon	63236363	63236584	+
GWHAAZE00000002	exon	63240419	63240580	+
GWHAAZE00000002	exon	63249012	63249248	+
GWHAAZE00000002	exon	63250079	63250252	+
GWHAAZE00000002	exon	63251037	63251282	+
GWHAAZE00000002	CDS	63224997	63225087	+
GWHAAZE00000002	CDS	63226976	63227075	+
GWHAAZE00000002	CDS	63227853	63227961	+
GWHAAZE00000002	CDS	63228321	63229823	+
GWHAAZE00000002	CDS	63232048	63232290	+
GWHAAZE00000002	CDS	63233132	63233446	+
GWHAAZE00000002	CDS	63235150	63235314	+
GWHAAZE00000002	CDS	63235970	63236254	+
GWHAAZE00000002	CDS	63236363	63236584	+
GWHAAZE00000002	CDS	63240419	63240580	+
GWHAAZE00000002	CDS	63249012	63249248	+
GWHAAZE00000002	CDS	63250079	63250252	+
GWHAAZE00000002	CDS	63251037	63251282	+

Transcript Sequence
>GWHTAAZE008174 GCGGAGGAGGAAGCAATTTTGTACGTTAATGGAGTTCGTCGAGTGCTACCTGATGGTTTAGCTCATCTCACTCTCCTCGAGTATCTCAGAGATATAGGAATGACAGGAACAAAACTAGGCTGTGGTGAAGGCGGTTGTGGGGCATGCACTGTGATGGTTTCTTATTTTGATCAGAATTTGAGGAAATGTGTGCACCATGCGGTCAACGCATGCTTGGCTCCTCTGTATTCTGTGGAAGGGATGCATGTAATTACAGTGGAGGGAGTTGGGAATTGCAGAAAAGGCTTGCATCCAGTCCAGGAATCATTAGCACGTTCCCATGGTTCTCAATGTGGATTTTGTACTCCTGGTTTTATCATGTCTATGTATGCATTATTAAGGTCAAGCCAAACTCCACCTAGTGAAGAACAGATAGAAGAAAGTCTTGCAGGAAATTTGTGTCGATGTACTGGTTATAGACCAATTATTGATGCCTTTCGAGTCTTTGCAAAGACTAATGATTTGTTATACACTAATCACTCCTTAAATAAGCCTAAGGAGGATGAGTTTATTTGCCCTTCAACTGGTAAGCCATGTTCTTGTGGAACAAAAGCTGCAATTGATGAAGGCCCCACCAAAAGTGGTTGCAGTAACGGGCATACACCTCTATCTTATAGTGAGATTGATGGAAGCGCATACACAAACAAAGAGCTCATATTTCCTCCTGAGCTGTTGTTGAGGAGATTGACTTATTTAAATTTAACTGGATTTGGTGGGCTTAAATGGTACAGGCCTTTAACTCTTCAACATGTATTAGTCCTAAAAGCAAGATACCCAAATGCAAAATTCATTGTTGGTAACACTGAGGTGGGAATTGAAACGAGGTTGAAGCGAATCCAGTACCCTGTTCTTATTTCTGTTATCCATATACCTGAATTGAATACATTAAGTGTGAAAGATGATGGACTGGAGATAGGTTCTGCAGTAAGACTGTCCGAGCTTCTGGAAACTTTTAGAAGGGTTACAAGTGAGCGTTCTTCTTATGAAACTTCATCATGTAGGGCCTTTATTGAGCAGTTAAAATGGTTTGCTGGAACACAAATAAGAAATGTTGCATCTGTTGGTGGGAATATTTGCACTGCCAGTCCAATATCGGACTTGAATCCTCTGTGGATGGCTGCTAGAGCAAAGTTCCGAATCATTGATTGCAAAGGAAACATTAGAACCACTTTGGCTGAAAATTTCTTCCTTGGTTATCGTAAGGTGGATTTGGCCAGTGATGAAATCCTACTCTCGGTTTTTTTACCTTGGGCCCGGCCTTTTGAACACGTGAAGGAATTTAAGCAGGCCCATCGAAGGGATGATGATATTGCAATTGTAAATGCAGGTATGCGTGTTTATCTCGAAAACAAGGATCGAAATTGGGTAGTTTCAGATGCTTCTGTTGTTTATGGAGGGGTTGCTCCTCTTTCTCTTACTGCATCAAGAACGAAAGATTTTTTAATTGGAAAGAGTTGGAATAAGGAGTTGTTGAAGGGTGCACTCAAAGTCTTGGAGCAGGATATTTTGATCAAGGAAGATGCACCGGGTGGCATGGTGGAGTTTCGAAGATCTTTAACCTTGAGCTTCTTCTTCAAGTTTTTCTTATGGGTTTCTCATCAAATGGATGGTCAAGATTTCTTTGGAGAAAGTGTACCGTCATCTCATCTGTCAGCTGTACAACCATTTCACCGACCATCTGTTATAGGAAGTCAGGACTTTGATATAACAAGGCAAGGGACTTCTGTGGGGTCTCCAGAGGTTCATCTCTCTGCAAAACTTCAGGTAACCGGAGAGGCAGAGTACACTGATGACACTCCAACGCCTCCGAACTGTTTACATGCTGCTTTGGTAGTGAGTCGAAAGCCTCATGCTCGAATACTTTCAATAGATGATTCTGGAGCCAAGTCTTCACCTGGATGTGCTGGAATATTTTTTGCCAAAGATGTTCCAGGTGATAGTTTCATCGGGCCAGTTATTGCTGATGAGGAACTTTTTGCTTCAGAATATGTTACTTGTGTGGGTCAGGCTATAGGAGTGGTAGTTGCTGCTACGCAAGAAAAAGCAAAACTTGCAGCACGGAAGGTACACGTTGAGTATGAAGAGTTACCAGCAATCTTATCAATACGGGACGCCCTCAAGTCTGAAAGTTTTCATCCAAATACAGAGAGGTATTTAGCAAAAGGGGATGTGGAACACTGTTTCAGGTCGGGTTTATGTGACAAGATCATAGAGGGGGAGGTTCAAATAGGAGGTCAAGAGCACTTCTATTTGGAGCCGCATAGCAGTTTGATATGGACGTTGGATGGTGGCAATGAGGTTCACATGATTTCATCAACTCAAGCTCCTCAAAAGCACCAGAAATATGTCTCTCATGTTCTTGGCCTTCCAATGTCAAAAGTAGTGTGCAAGACAAAGAGAATCGGTGGTGGATTTGGAGGGAAGGAAACAAGGTCAGCTTTCCTTGCAGCTGTGGCTTCTGTGCCATCATATCAGTTGAATCGTCCAGTTGGGTTCACAAATGATGGAAGGGTGCTTGCTCTGGATCTTGAAATCTTCAATAATGCGGGAAATTCACTCGATCTCTCTCTTGCTATACTTGAACGTGCTATGTTCCATTCCGATAATGTATATGAGATACCAAATGTTAGGATTAGAGGAAGGGTTTGCTTCACTAATTTTCCTAGTAATACCGCCTTCCGAGGATTTGGCGGTCCTCAAGGTATGCTAGTTACTGAAAATTGGATTCAAAGAATAGCCATGGAAGTTAATAAAACGGCAGAAGAGATACGGGAAATTAATTTTCTAAGTGAAGGATCAATACTGCATTATGGACAGAAAATTGAACGATGTACCTTGGACCGGCTCTGGAATGAACTGAAGTCATCTTGTGACTTTTTAAATGCTCGGGAAGAAGTGAAAAAGTTTAATCTTCACAATAGGTGGAAGAAGCGCGGAGTTGCTATGGTTCCAACAAAATTTGGCATCTCGTTCACAGCAAAGTTTATGAACCAGGCAGGTGCACTTGTCCAAGTGTACACCGATGGAACAGTGTTGGTTACACATGGGGGTGTCGAGATGGGACAAGGTTTACATACCAAAGTTGCTCAGATTGCTGCTTCTGCCTTTGATATTCCTCTCTCTTCTGTATTTATATCAGAGACAAGTACGGACAAGCTGGCAAATGCATGTTACATGGAGCGAATAGATCTTTCTGCTCATGGGTTTTACATTACACCCGATATCGACTTTGATTGGGTAACTGGTAAAGGGAGACCATTCAGGTACTTCACATATGGGGCCGCATTTGCTGAAGTTGAAGTTGATACATTGACAGGAGATTTCCAGACAAGGAAAGCAGATGTTATTTTGGATCTTGGATTTTCTCTCAATCCGGCCATAGATGTTGGACAGGTCGAGGGAGCATTTATACAAGGATTGGGATGGGTAGCATTGGAAGAGTTAAAATGGGGGGACGCAGCTCACAAATGGATCCCACCTGGCTGCTTGTTCACATGTGGGCCCGGAAGCTACAAAATTCCATCCGTGAACGACGTCCCTTTCAAGTTCAACATCTCTCTCTTGAAGGATGCTCCAAATGTCGATAAGGCCATCCATTCGTCTAAAGCGGTGGGTGAACCGCCATTCTTTCTTGCCTCTGCCGTCTTTTTTGCCATCAAAGATGCAATTATAGGCGCAAGAGCTGAAGTGGGGTGTAAATCTTGGTTTCCTCTTGATAATCCAGCTACGCCTGAACGGATACGTATGGCTTGTACTGACGAATTTACTGAATCAGTTACTGCCTCTGATTTTCACCCCAAACTTAGTGTTTGA

Network for GWHGAAZE008166

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00111.28	Fer2	9	74	4.10E-06
PF01799.21	Fer2_2	85	159	3.20E-31
PF00941.22	FAD_binding_5	254	430	9.30E-49
PF03450.18	CO_deh_flav_C	439	544	2.60E-30
PF01315.23	Ald_Xan_dh_C	603	710	2.50E-31
PF02738.19	Ald_Xan_dh_C2	725	845	8.10E-32
PF02738.19	Ald_Xan_dh_C2	843	1069	2.00E-79
PF02738.19	Ald_Xan_dh_C2	1066	1193	3.80E-38

Protein Sequence

>GWHPAAZE008170
AEEEAILYVNGVRRVLPDGLAHLTLLEYLRDIGMTGTKLGCGEGGCGACTVMVSYFDQNLRKCVHHAVNACLAPLYSVEGMHVITVEGVGNCRKGLHPVQESLARSHGSQCGFCTPGFIMSMYALLRSSQTPPSEEQIEESLAGNLCRCTGYRPIIDAFRVFAKTNDLLYTNHSLNKPKEDEFICPSTGKPCSCGTKAAIDEGPTKSGCSNGHTPLSYSEIDGSAYTNKELIFPPELLLRRLTYLNLTGFGGLKWYRPLTLQHVLVLKARYPNAKFIVGNTEVGIETRLKRIQYPVLISVIHIPELNTLSVKDDGLEIGSAVRLSELLETFRRVTSERSSYETSSCRAFIEQLKWFAGTQIRNVASVGGNICTASPISDLNPLWMAARAKFRIIDCKGNIRTTLAENFFLGYRKVDLASDEILLSVFLPWARPFEHVKEFKQAHRRDDDIAIVNAGMRVYLENKDRNWVVSDASVVYGGVAPLSLTASRTKDFLIGKSWNKELLKGALKVLEQDILIKEDAPGGMVEFRRSLTLSFFFKFFLWVSHQMDGQDFFGESVPSSHLSAVQPFHRPSVIGSQDFDITRQGTSVGSPEVHLSAKLQVTGEAEYTDDTPTPPNCLHAALVVSRKPHARILSIDDSGAKSSPGCAGIFFAKDVPGDSFIGPVIADEELFASEYVTCVGQAIGVVVAATQEKAKLAARKVHVEYEELPAILSIRDALKSESFHPNTERYLAKGDVEHCFRSGLCDKIIEGEVQIGGQEHFYLEPHSSLIWTLDGGNEVHMISSTQAPQKHQKYVSHVLGLPMSKVVCKTKRIGGGFGGKETRSAFLAAVASVPSYQLNRPVGFTNDGRVLALDLEIFNNAGNSLDLSLAILERAMFHSDNVYEIPNVRIRGRVCFTNFPSNTAFRGFGGPQGMLVTENWIQRIAMEVNKTAEEIREINFLSEGSILHYGQKIERCTLDRLWNELKSSCDFLNAREEVKKFNLHNRWKKRGVAMVPTKFGISFTAKFMNQAGALVQVYTDGTVLVTHGGVEMGQGLHTKVAQIAASAFDIPLSSVFISETSTDKLANACYMERIDLSAHGFYITPDIDFDWVTGKGRPFRYFTYGAAFAEVEVDTLTGDFQTRKADVILDLGFSLNPAIDVGQVEGAFIQGLGWVALEELKWGDAAHKWIPPGCLFTCGPGSYKIPSVNDVPFKFNISLLKDAPNVDKAIHSSKAVGEPPFFLASAVFFAIKDAIIGARAEVGCKSWFPLDNPATPERIRMACTDEFTESVTASDFHPKLSV

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00106	XDH	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Microbial metabolism in diverse environments	map01120
		Purine metabolism	map00230
		Caffeine metabolism	map00232
		Drug metabolism - other enzymes	map00983
		Peroxisome	map04146

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0016491	molecular_function	oxidoreductase activity
GO:0009055	molecular_function	electron transfer activity
GO:0051536	molecular_function	iron-sulfur cluster binding
GO:0046872	molecular_function	metal ion binding
GO:0051537	molecular_function	2 iron, 2 sulfur cluster binding
GO:0005506	molecular_function	iron ion binding
GO:0050660	molecular_function	flavin adenine dinucleotide binding
GO:0071949	molecular_function	FAD binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	9.288
	SRR3591706	second leaf	6.295
	SRR3591707	mature leaf	10.023
	SRR3591708	Shoot apex	8.776
	SRR3591709	Stem	10.869
	SRR3591710	White floral bud	13.333
	SRR3591711	White flower	28.538
	SRR3591712	Green floral bud	8.510
	SRR3591713	Yellow flower	34.492
SRP173429	SRR8316895	Juvenile bud stage	6.716
	SRR8316896	Juvenile bud stage	10.882
	SRR8316897	Juvenile bud stage	5.600
	SRR8316894	Third green stage	5.253
	SRR8316900	Third green stage	14.801
	SRR8316901	Third green stage	13.414
	SRR8316898	Complete white stage	6.788
	SRR8316899	Complete white stage	17.307
	SRR8316903	Complete white stage	15.417
	SRR8316902	Silver flowering stage	11.676
	SRR8316904	Silver flowering stage	17.260
	SRR8316905	Silver flowering stage	8.350
	SRR8316906	Gold flowering stage	38.236
	SRR8316907	Gold flowering stage	31.998
	SRR8316908	Gold flowering stage	45.694
SRP132670	SRR6706286	Control	11.483
	SRR6706287	Light intensity 50%	12.593
	SRR6706288	Light intensity 20%	13.226
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	7.684
	CNS0095593	Slightly white alabastrum(diploid) 2	7.335
	CNS0095594	Slightly white alabastrum(diploid) 3	8.755
	CNS0095595	Whole white alabastrum(diploid) 2	6.775
	CNS0095596	Whole white alabastrum(diploid) 3	6.756
	CNS0095597	Whole white alabastrum(diploid) 4	8.120
	CNS0095598	Silvery flower (diploied) 1	11.850
	CNS0095599	Silvery flower (diploied) 2	11.062
	CNS0095600	Silvery flower (diploied) 3	29.763
	CNS0095601	Golden flower (diploid) 1	14.262
	CNS0095602	Golden flower (diploid) 2	35.479
	CNS0095603	Golden flower (diploid) 3	32.572
	CNS0095604	Slightly white alabastrum(tetraploid) 1	7.484
	CNS0095605	Slightly white alabastrum(tetraploid) 2	6.544
	CNS0095606	Slightly white alabastrum(tetraploid) 3	15.376
	CNS0095607	Whole white alabastrum(tetraploid) 1	6.381
	CNS0095608	Whole white alabastrum(tetraploid) 2	5.663
	CNS0095609	Whole white alabastrum(tetraploid) 3	12.202
	CNS0095610	Silvery flower (tetraploid) 1	36.892
	CNS0095611	Silvery flower (tetraploid) 2	37.268
	CNS0095612	Silvery flower (tetraploid) 3	28.989
	CNS0095613	Golden flower (tetraploid) 1	24.127
	CNS0095614	Golden flower (tetraploid) 2	35.746
	CNS0095615	Golden flower (tetraploid) 3	46.945
CRA001975	CRR073297	Stem 1	8.809
	CRR073298	Stem 2	8.838
	CRR073299	Stem 3	7.005
	CRR073300	Leaf 1	10.608
	CRR073301	Leaf 2	9.539
	CRR073302	Leaf 3	7.624
	CRR073303	Juvenile bud 1	10.404
	CRR073304	Juvenile bud 2	8.526
	CRR073305	Juvenile bud 3	13.739
	CRR073306	Third green 1	8.197
	CRR073307	Third green 2	5.322
	CRR073308	Third green 3	8.904
	CRR073309	Second white 1	13.501
	CRR073310	Second white 2	14.681
	CRR073311	Second white 3	18.553
	CRR073312	Silver flowering 1	18.358
	CRR073313	Silver flowering 2	15.023
	CRR073314	Silver flowering 3	16.206
	CRR073315	Gold flowering 1	3.952
	CRR073316	Gold flowering 2	7.614
	CRR073317	Gold flowering 3	4.767
	CRR073318	Tawny withering 1	8.509
	CRR073319	Tawny withering 2	8.692
	CRR073320	Tawny withering 3	6.073