Gene detail

Detail information of GWHGAAZE008146

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	AHJ79217.1	4.95228E-38	NAC domain protein NAC76 [Gossypium hirsutum]
Swissprot	tr\|A2YMR0\|NAC10_ORYSI	8E-29	NAC transcription factor ONAC010
trEMBL	tr\|W6JF18\|W6JF18_GOSHI	2E-38	NAC domain protein NAC76 {ECO:0000313\|EMBL:AHJ79217.1}
TAIR10	AT1G77450.1	5E-18	NAC domain containing protein 32

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	62686265	62690128	-
GWHAAZE00000002	mRNA	62686265	62690128	-
GWHAAZE00000002	exon	62686265	62686352	-
GWHAAZE00000002	exon	62686428	62686491	-
GWHAAZE00000002	exon	62686591	62686678	-
GWHAAZE00000002	exon	62687268	62688063	-
GWHAAZE00000002	exon	62688358	62688640	-
GWHAAZE00000002	exon	62689864	62690128	-
GWHAAZE00000002	CDS	62689864	62690128	-
GWHAAZE00000002	CDS	62688358	62688640	-
GWHAAZE00000002	CDS	62687268	62688063	-
GWHAAZE00000002	CDS	62686591	62686678	-
GWHAAZE00000002	CDS	62686428	62686491	-
GWHAAZE00000002	CDS	62686265	62686352	-

Transcript Sequence
>GWHTAAZE008154 ATGGCGAAGATTATTAATAACAATAATAATCAAGAAGAAGAAGAAGATGATCAGCAGCAATGGCAACCACAGCCGCCTCTTATAGTACACCAACTTCAAACTAACAATGGCAATGAGATCAGAAAGGTTCCACTTGGGTACAAATTTTGCCCCTATGATCATGAAATACTTCATTACTTGTGGAACAAGATTCTCGACCGTCCTATCCCTTGCGATCGCATTCGAGAGGTCGAACTCTATCGTTACCACCCTCGGCAGCTTGCAGAATGTCATGATATGATGGAAGAAAAAGAGATGTACTTCTTTACTCCACGGGACCGAAAGTACAAAAACGGGGGACGACCAAATCGAGCAGCCGGTAATGGTTATTGGAAGGCCAATGCAGCTGAGAGGAAGGTGGAACATAGGGACAAAATCATTGGTCATAAGAGAACACTGACTTACTATGAAGGAAAACCTCCCAAAGGGACAAGACCAATTGGATTATGCATGAGTTTAGAGTCAAAGGCGGTCCAGCTAGAGTCAAGATGTCTCCTGATGACACGAGGAGCAGTGGGTAGGTCGAGGAGAGCCGAACAAAGAGATGATGATGACAAAGATGTTGAGCCTGTCAAGAGGAACAAGGATAATCACATAGAAATGAGCAACAATCTCAATCAAATTGGTGACGCAAATATACTAACTAACAACCCATCCAATGACTATTTTTCCTCTGATATCGATTTGGCTCTATCTCAAATCCCTCCATTCAAGGATTATCCCTCTACTGTGGACACTTGCATTCCTAATCATTCGCCTCAACCCATTTCTTATAGTCACACAGATCCTAATCTTCATTTGGCTCAATCCTCGTCATATAGTCACCCAGATCCTAATTATTATTCGACTGGACCCACTTCATATAGCCACCTGGATCCTAATCATCATTCAGCTCAACCAGCATCATATAGTCATTCGTATCCTACTCATCTTCCGGCTCGACCAGCTTCAAATAATACTCATCATTCAGCTCAATATGGACAGGAGGACATTATGAGGTCAAGGTGCATAAAAGAAGATGTTTGGGGAATTGATCTTGGTTACTCCTCTTCTGATTATCCCAATCCCCTAATGGAATTGGGTACCCTCTTGCCTGATAATCACCTTGAGTTTGAATATATCTTGACTGATGATCCCCAAGAACAAATTTCGGATATTATTTTGAACAATAATGATCCAAATTTCCATAATATTTTGGTTAATAACTTACACCCAAATTATGCTCCAGCCCCACCGGAAGATAATTCCCCAAGTAATGCTCTAGCCCCAAAAGATAATAACACTGAAGGGTCCCAATCTGGATCCTTCATTGTTCATGTGATTCCTCTTAATGCTCTAGAGGTTGCCAAAAATTCTATGAAGGGGTTCAGGGATTTCTATAAGGCAAATTCAGGTAGATCTGTTATCACTTGTGTTTTGCGAGATTCTTTGGGGATCTTGCAAGCTTTTGGCAATAGAGCTGGCTTGTCTTGTATTTCAGAGGAGAATGATAATGCAGCTCTTGTTCCACTGTGGGAATTCGGAGCTGTTTTGATGGATAATTAA

Network for GWHGAAZE008146

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02365.16	NAM	44	154	1.70E-19

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	NAC

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.119
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	0.476
	SRR3591711	White flower	0.553
	SRR3591712	Green floral bud	1.018
	SRR3591713	Yellow flower	0.447
SRP173429	SRR8316895	Juvenile bud stage	0.931
	SRR8316896	Juvenile bud stage	1.091
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.193
	SRR8316900	Third green stage	0.275
	SRR8316901	Third green stage	0.191
	SRR8316898	Complete white stage	0.150
	SRR8316899	Complete white stage	0.684
	SRR8316903	Complete white stage	0.264
	SRR8316902	Silver flowering stage	0.080
	SRR8316904	Silver flowering stage	0.097
	SRR8316905	Silver flowering stage	0.099
	SRR8316906	Gold flowering stage	0.295
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.064
SRP132670	SRR6706286	Control	0.248
	SRR6706287	Light intensity 50%	0.084
	SRR6706288	Light intensity 20%	0.096
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.078
	CNS0095593	Slightly white alabastrum(diploid) 2	0.402
	CNS0095594	Slightly white alabastrum(diploid) 3	0.934
	CNS0095595	Whole white alabastrum(diploid) 2	0.214
	CNS0095596	Whole white alabastrum(diploid) 3	0.087
	CNS0095597	Whole white alabastrum(diploid) 4	0.145
	CNS0095598	Silvery flower (diploied) 1	0.956
	CNS0095599	Silvery flower (diploied) 2	0.496
	CNS0095600	Silvery flower (diploied) 3	0.086
	CNS0095601	Golden flower (diploid) 1	0.205
	CNS0095602	Golden flower (diploid) 2	0.247
	CNS0095603	Golden flower (diploid) 3	0.218
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.058
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.086
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.081
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.018
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.000
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.000
	CNS0095612	Silvery flower (tetraploid) 3	0.034
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.396
	CRR073298	Stem 2	0.440
	CRR073299	Stem 3	0.244
	CRR073300	Leaf 1	0.324
	CRR073301	Leaf 2	0.373
	CRR073302	Leaf 3	0.044
	CRR073303	Juvenile bud 1	0.187
	CRR073304	Juvenile bud 2	0.143
	CRR073305	Juvenile bud 3	0.186
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.017
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.136
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.097
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.039
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.073
	CRR073320	Tawny withering 3	0.200