Detail information of GWHGAAZE008135


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrNP_001274809.17.06324E-35uncharacterized protein LOC102577678 [Solanum tuberosum]
trEMBLtr|Q3HRW9|Q3HRW9_SOLTU3E-35Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400023798}
TAIR10AT1G51510.10.004RNA-binding (RRM/RBD/RNP motifs) family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene6238563662385902+
GWHAAZE00000002mRNA6238563662385902+
GWHAAZE00000002exon6238563662385902+
GWHAAZE00000002CDS6238563662385902+
Transcript Sequence

Network for GWHGAAZE008135

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
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Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K12876RBM8A, Y14 Spliceosome map03040
RNA transportmap03013
mRNA surveillance pathwaymap03015

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf11.591
SRR3591706second leaf11.888
SRR3591707mature leaf8.994
SRR3591708Shoot apex24.198
SRR3591709Stem10.305
SRR3591710White floral bud10.886
SRR3591711White flower6.671
SRR3591712Green floral bud11.024
SRR3591713Yellow flower5.589
SRP173429 SRR8316895Juvenile bud stage 14.587
SRR8316896Juvenile bud stage 26.697
SRR8316897Juvenile bud stage 12.812
SRR8316894Third green stage 9.765
SRR8316900Third green stage 32.636
SRR8316901Third green stage 33.975
SRR8316898Complete white stage 13.359
SRR8316899Complete white stage 34.245
SRR8316903Complete white stage 20.115
SRR8316902Silver flowering stage18.048
SRR8316904Silver flowering stage12.456
SRR8316905Silver flowering stage7.660
SRR8316906Gold flowering stage 26.879
SRR8316907Gold flowering stage 24.313
SRR8316908Gold flowering stage 30.565
SRP132670SRR6706286Control52.054
SRR6706287Light intensity 50%55.032
SRR6706288Light intensity 20%52.938
CNP0000432CNS0095592Slightly white alabastrum(diploid) 133.620
CNS0095593Slightly white alabastrum(diploid) 231.836
CNS0095594Slightly white alabastrum(diploid) 329.133
CNS0095595Whole white alabastrum(diploid) 235.922
CNS0095596Whole white alabastrum(diploid) 350.377
CNS0095597Whole white alabastrum(diploid) 436.133
CNS0095598Silvery flower (diploied) 122.589
CNS0095599Silvery flower (diploied) 222.527
CNS0095600Silvery flower (diploied) 329.738
CNS0095601Golden flower (diploid) 128.082
CNS0095602Golden flower (diploid) 229.237
CNS0095603Golden flower (diploid) 332.076
CNS0095604Slightly white alabastrum(tetraploid) 148.236
CNS0095605Slightly white alabastrum(tetraploid) 273.608
CNS0095606Slightly white alabastrum(tetraploid) 330.547
CNS0095607Whole white alabastrum(tetraploid) 173.966
CNS0095608Whole white alabastrum(tetraploid) 265.908
CNS0095609Whole white alabastrum(tetraploid) 349.660
CNS0095610Silvery flower (tetraploid) 132.261
CNS0095611Silvery flower (tetraploid) 235.058
CNS0095612Silvery flower (tetraploid) 332.189
CNS0095613Golden flower (tetraploid) 124.440
CNS0095614Golden flower (tetraploid) 225.445
CNS0095615Golden flower (tetraploid) 333.103
CRA001975CRR073297Stem 143.119
CRR073298Stem 241.941
CRR073299Stem 342.106
CRR073300Leaf 139.450
CRR073301Leaf 239.934
CRR073302Leaf 345.994
CRR073303Juvenile bud 133.138
CRR073304Juvenile bud 230.501
CRR073305Juvenile bud 328.624
CRR073306Third green 122.479
CRR073307Third green 227.583
CRR073308Third green 318.155
CRR073309Second white 117.641
CRR073310Second white 215.683
CRR073311Second white 312.779
CRR073312Silver flowering 113.293
CRR073313Silver flowering 216.253
CRR073314Silver flowering 312.995
CRR073315Gold flowering 141.987
CRR073316Gold flowering 245.017
CRR073317Gold flowering 340.752
CRR073318Tawny withering 141.237
CRR073319Tawny withering 230.914
CRR073320Tawny withering 341.712