Detail information of GWHGAAZE008087


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009357262.10PREDICTED: probable RNA 3'-terminal phosphate cyclase-like protein isoform X1 [Pyrus x bretschneideri]
Swissprottr|Q9C578|RCL1_ARATH0Probable RNA 3'-terminal phosphate cyclase-like protein
trEMBLtr|K4B7R6|K4B7R6_SOLLC0Uncharacterized protein {ECO:0000313|EnsemblPlants:Solyc02g069340.2.1}
TAIR10AT5G22100.12E-140RNA cyclase family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene6100612261018721-
GWHAAZE00000002mRNA6100612261018721-
GWHAAZE00000002exon6101869961018721-
GWHAAZE00000002exon6101274061012909-
GWHAAZE00000002exon6101166061011809-
GWHAAZE00000002exon6100984861010029-
GWHAAZE00000002exon6100958661009761-
GWHAAZE00000002exon6100873661008952-
GWHAAZE00000002exon6100612261006331-
GWHAAZE00000002CDS6101869961018721-
GWHAAZE00000002CDS6101274061012909-
GWHAAZE00000002CDS6101166061011809-
GWHAAZE00000002CDS6100984861010029-
GWHAAZE00000002CDS6100958661009761-
GWHAAZE00000002CDS6100873661008952-
GWHAAZE00000002CDS6100612261006331-
Transcript Sequence

Network for GWHGAAZE008087

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01137.22RTC93492.30E-55
PF05189.14RTC_insert1812963.40E-34
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K11108RCL1 Ribosome biogenesis in eukaryotes map03008

Gene Ontology

GO term OntologyName
GO:0042254biological_processribosome biogenesis
GO:0005730cellular_componentnucleolus
GO:0003824molecular_functioncatalytic activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf19.605
SRR3591706second leaf17.759
SRR3591707mature leaf11.658
SRR3591708Shoot apex24.794
SRR3591709Stem15.338
SRR3591710White floral bud18.005
SRR3591711White flower25.186
SRR3591712Green floral bud25.159
SRR3591713Yellow flower17.546
SRP173429 SRR8316895Juvenile bud stage 15.281
SRR8316896Juvenile bud stage 20.351
SRR8316897Juvenile bud stage 12.134
SRR8316894Third green stage 7.121
SRR8316900Third green stage 23.094
SRR8316901Third green stage 20.425
SRR8316898Complete white stage 10.141
SRR8316899Complete white stage 25.237
SRR8316903Complete white stage 12.517
SRR8316902Silver flowering stage10.760
SRR8316904Silver flowering stage11.454
SRR8316905Silver flowering stage5.372
SRR8316906Gold flowering stage 18.480
SRR8316907Gold flowering stage 20.855
SRR8316908Gold flowering stage 22.314
SRP132670SRR6706286Control20.490
SRR6706287Light intensity 50%21.017
SRR6706288Light intensity 20%22.057
CNP0000432CNS0095592Slightly white alabastrum(diploid) 114.014
CNS0095593Slightly white alabastrum(diploid) 213.377
CNS0095594Slightly white alabastrum(diploid) 313.923
CNS0095595Whole white alabastrum(diploid) 211.837
CNS0095596Whole white alabastrum(diploid) 312.372
CNS0095597Whole white alabastrum(diploid) 48.581
CNS0095598Silvery flower (diploied) 113.311
CNS0095599Silvery flower (diploied) 212.757
CNS0095600Silvery flower (diploied) 314.663
CNS0095601Golden flower (diploid) 18.759
CNS0095602Golden flower (diploid) 214.517
CNS0095603Golden flower (diploid) 313.994
CNS0095604Slightly white alabastrum(tetraploid) 116.658
CNS0095605Slightly white alabastrum(tetraploid) 215.125
CNS0095606Slightly white alabastrum(tetraploid) 323.198
CNS0095607Whole white alabastrum(tetraploid) 111.743
CNS0095608Whole white alabastrum(tetraploid) 26.651
CNS0095609Whole white alabastrum(tetraploid) 316.606
CNS0095610Silvery flower (tetraploid) 115.421
CNS0095611Silvery flower (tetraploid) 214.007
CNS0095612Silvery flower (tetraploid) 315.247
CNS0095613Golden flower (tetraploid) 17.684
CNS0095614Golden flower (tetraploid) 216.473
CNS0095615Golden flower (tetraploid) 311.878
CRA001975CRR073297Stem 126.462
CRR073298Stem 222.077
CRR073299Stem 323.733
CRR073300Leaf 122.253
CRR073301Leaf 221.603
CRR073302Leaf 323.733
CRR073303Juvenile bud 121.376
CRR073304Juvenile bud 218.358
CRR073305Juvenile bud 325.564
CRR073306Third green 116.330
CRR073307Third green 216.714
CRR073308Third green 316.389
CRR073309Second white 120.757
CRR073310Second white 220.695
CRR073311Second white 320.595
CRR073312Silver flowering 119.907
CRR073313Silver flowering 223.420
CRR073314Silver flowering 323.532
CRR073315Gold flowering 112.418
CRR073316Gold flowering 215.374
CRR073317Gold flowering 315.218
CRR073318Tawny withering 121.667
CRR073319Tawny withering 217.649
CRR073320Tawny withering 323.801