Detail information of GWHGAAZE008076


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009625610.10PREDICTED: 2-oxoisovalerate dehydrogenase subunit alpha 2, mitochondrial-like [Nicotiana tomentosiformis]
Swissprottr|Q84JL2|ODBA2_ARATH02-oxoisovalerate dehydrogenase subunit alpha 2, mitochondrial (Precursor)
trEMBLtr|D7U4C7|D7U4C7_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CBI37524.3}
TAIR10AT5G09300.14E-173Thiamin diphosphate-binding fold (THDP-binding) superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene6073921760745458-
GWHAAZE00000002mRNA6073921760745458-
GWHAAZE00000002exon6073921760739384-
GWHAAZE00000002exon6073994360740128-
GWHAAZE00000002exon6074097160741136-
GWHAAZE00000002exon6074119360741296-
GWHAAZE00000002exon6074224760742346-
GWHAAZE00000002exon6074246360742620-
GWHAAZE00000002exon6074329860743480-
GWHAAZE00000002exon6074358660743723-
GWHAAZE00000002exon6074518660745458-
GWHAAZE00000002CDS6074518660745458-
GWHAAZE00000002CDS6074358660743723-
GWHAAZE00000002CDS6074329860743480-
GWHAAZE00000002CDS6074246360742620-
GWHAAZE00000002CDS6074224760742346-
GWHAAZE00000002CDS6074119360741296-
GWHAAZE00000002CDS6074097160741136-
GWHAAZE00000002CDS6073994360740128-
GWHAAZE00000002CDS6073921760739384-
Transcript Sequence

Network for GWHGAAZE008076

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00676.21E1_dh1494502.60E-90
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K00166BCKDHA, bkdA1 Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Propanoate metabolismmap00640
Valine, leucine and isoleucine degradationmap00280

Gene Ontology

GO term OntologyName
GO:0016624molecular_functionoxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf19.923
SRR3591706second leaf10.474
SRR3591707mature leaf3.051
SRR3591708Shoot apex19.459
SRR3591709Stem12.661
SRR3591710White floral bud9.145
SRR3591711White flower7.439
SRR3591712Green floral bud13.381
SRR3591713Yellow flower8.021
SRP173429 SRR8316895Juvenile bud stage 15.408
SRR8316896Juvenile bud stage 18.878
SRR8316897Juvenile bud stage 7.991
SRR8316894Third green stage 9.025
SRR8316900Third green stage 24.996
SRR8316901Third green stage 23.943
SRR8316898Complete white stage 8.785
SRR8316899Complete white stage 27.187
SRR8316903Complete white stage 11.923
SRR8316902Silver flowering stage4.326
SRR8316904Silver flowering stage5.391
SRR8316905Silver flowering stage4.083
SRR8316906Gold flowering stage 10.570
SRR8316907Gold flowering stage 10.241
SRR8316908Gold flowering stage 7.678
SRP132670SRR6706286Control26.529
SRR6706287Light intensity 50%26.265
SRR6706288Light intensity 20%29.204
CNP0000432CNS0095592Slightly white alabastrum(diploid) 118.638
CNS0095593Slightly white alabastrum(diploid) 222.431
CNS0095594Slightly white alabastrum(diploid) 313.799
CNS0095595Whole white alabastrum(diploid) 215.241
CNS0095596Whole white alabastrum(diploid) 315.027
CNS0095597Whole white alabastrum(diploid) 413.378
CNS0095598Silvery flower (diploied) 18.873
CNS0095599Silvery flower (diploied) 210.651
CNS0095600Silvery flower (diploied) 310.346
CNS0095601Golden flower (diploid) 19.889
CNS0095602Golden flower (diploid) 28.506
CNS0095603Golden flower (diploid) 38.487
CNS0095604Slightly white alabastrum(tetraploid) 112.583
CNS0095605Slightly white alabastrum(tetraploid) 212.018
CNS0095606Slightly white alabastrum(tetraploid) 320.946
CNS0095607Whole white alabastrum(tetraploid) 18.979
CNS0095608Whole white alabastrum(tetraploid) 28.438
CNS0095609Whole white alabastrum(tetraploid) 315.140
CNS0095610Silvery flower (tetraploid) 14.266
CNS0095611Silvery flower (tetraploid) 23.969
CNS0095612Silvery flower (tetraploid) 31.365
CNS0095613Golden flower (tetraploid) 11.710
CNS0095614Golden flower (tetraploid) 23.326
CNS0095615Golden flower (tetraploid) 30.643
CRA001975CRR073297Stem 120.748
CRR073298Stem 221.255
CRR073299Stem 315.598
CRR073300Leaf 120.515
CRR073301Leaf 222.062
CRR073302Leaf 315.349
CRR073303Juvenile bud 119.052
CRR073304Juvenile bud 214.257
CRR073305Juvenile bud 320.346
CRR073306Third green 15.895
CRR073307Third green 26.504
CRR073308Third green 35.237
CRR073309Second white 12.314
CRR073310Second white 20.821
CRR073311Second white 30.724
CRR073312Silver flowering 10.525
CRR073313Silver flowering 21.588
CRR073314Silver flowering 31.297
CRR073315Gold flowering 11.927
CRR073316Gold flowering 22.808
CRR073317Gold flowering 31.879
CRR073318Tawny withering 18.376
CRR073319Tawny withering 29.801
CRR073320Tawny withering 310.598