Gene detail

Detail information of GWHGAAZE008053

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009626617.1	2.8507E-162	PREDICTED: uncharacterized protein LOC104117286 [Nicotiana tomentosiformis]
trEMBL	tr\|M1D3M1\|M1D3M1_SOLTU	1E-158	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400080512}
TAIR10	AT3G18680.1	1E-115	Amino acid kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	60318483	60328095	+
GWHAAZE00000002	mRNA	60318483	60328095	+
GWHAAZE00000002	exon	60318483	60318640	+
GWHAAZE00000002	exon	60320636	60320783	+
GWHAAZE00000002	exon	60320879	60320932	+
GWHAAZE00000002	exon	60321409	60321500	+
GWHAAZE00000002	exon	60326360	60326586	+
GWHAAZE00000002	exon	60327887	60328095	+
GWHAAZE00000002	CDS	60318483	60318640	+
GWHAAZE00000002	CDS	60320636	60320783	+
GWHAAZE00000002	CDS	60320879	60320932	+
GWHAAZE00000002	CDS	60321409	60321500	+
GWHAAZE00000002	CDS	60326360	60326586	+
GWHAAZE00000002	CDS	60327887	60328095	+

Transcript Sequence
>GWHTAAZE008061 ATGCCTTCTTCGCAATCCCAATCATCCCCATCTTTCTTCAAAACGCATAACCACAATCTCCCCACAAAGGGTTCTCATTACTCATCATATGCACCGTTAGTGGTCAATTGTTCTTCTGCAGAAATGGGTCCTTCATCATCAGACCACCTGAATTTCAGGCATCCTCAATATTCTTCTATGACTCCTTTTGGTGTCACAATGAATGAAGATGGAATGTCCAAACCTTCCTTTAAATGGCGCAGGGTGCTGCTTAAAGTAAGTGGAGAAGCCCTTGCGGGTGATCAAGCACAGAATATTGATCCGAAGGTTTTAATGGCCATTGCAAAGGAGGTTGCCACTGTGGCTCGACTTGGTATCGAGGTTGCAATAGTAGTTGGTGGAGGGAATATCTTCCGTGGATCCACTTGGGCTGGAAGTAGTGGCCTTGACCGTTCATCTGCTGATTACATTGGGATGTTGGCAACTGTTATGAATGCGATATTTTTGCAAGCAACGATGGAGAGCATGGGCATCCCAACAAGAGTGCAGACAGCATTTCGGATGTCTGAAGTTGCAGAACCGTACATACGTAGAAGGGCCATTAGGCATTTAGAGAAAGGAAGGGTGGTTATCTTTGCTGCTGGAACTGGAAATCCCTTCTTTACAACTGATACTGCTGCAGCCCTTCGGTGTGCTGAGATTAATGCGGAGGTAGTGCTGAAAGCTACAAATGTTGATGGGGTATTTGATGATAACCCGAGGCATAACCCAAATGCTCGCCTTCTTGACAATCTGACTTATCACGAAGTAATCTCCCGAGAACTTTCAGTGATGGACCTCACTGCCATTACTTTGTGTCAAGAGAACAACATTCCAGGTATACATTTTTCTCTACTAAGTTCTCTTTAA

Network for GWHGAAZE008053

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00696.29	AA_kinase	81	285	2.50E-29

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K09903	pyrH	Metabolic pathways	map01100
K09903	pyrH	Pyrimidine metabolism	map00240

Gene Ontology

GO term	Ontology	Name
GO:0006221	biological_process	pyrimidine nucleotide biosynthetic process
GO:0005737	cellular_component	cytoplasm
GO:0033862	molecular_function	UMP kinase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	23.467
	SRR3591706	second leaf	29.876
	SRR3591707	mature leaf	43.834
	SRR3591708	Shoot apex	32.843
	SRR3591709	Stem	16.927
	SRR3591710	White floral bud	17.215
	SRR3591711	White flower	13.547
	SRR3591712	Green floral bud	52.524
	SRR3591713	Yellow flower	16.329
SRP173429	SRR8316895	Juvenile bud stage	9.909
	SRR8316896	Juvenile bud stage	17.712
	SRR8316897	Juvenile bud stage	5.199
	SRR8316894	Third green stage	8.752
	SRR8316900	Third green stage	39.807
	SRR8316901	Third green stage	34.935
	SRR8316898	Complete white stage	8.545
	SRR8316899	Complete white stage	56.911
	SRR8316903	Complete white stage	11.925
	SRR8316902	Silver flowering stage	5.808
	SRR8316904	Silver flowering stage	7.320
	SRR8316905	Silver flowering stage	3.896
	SRR8316906	Gold flowering stage	15.182
	SRR8316907	Gold flowering stage	13.555
	SRR8316908	Gold flowering stage	14.743
SRP132670	SRR6706286	Control	25.119
	SRR6706287	Light intensity 50%	31.266
	SRR6706288	Light intensity 20%	34.566
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	8.972
	CNS0095593	Slightly white alabastrum(diploid) 2	11.885
	CNS0095594	Slightly white alabastrum(diploid) 3	7.085
	CNS0095595	Whole white alabastrum(diploid) 2	11.352
	CNS0095596	Whole white alabastrum(diploid) 3	8.762
	CNS0095597	Whole white alabastrum(diploid) 4	10.329
	CNS0095598	Silvery flower (diploied) 1	11.831
	CNS0095599	Silvery flower (diploied) 2	7.055
	CNS0095600	Silvery flower (diploied) 3	20.188
	CNS0095601	Golden flower (diploid) 1	8.701
	CNS0095602	Golden flower (diploid) 2	17.790
	CNS0095603	Golden flower (diploid) 3	16.474
	CNS0095604	Slightly white alabastrum(tetraploid) 1	13.587
	CNS0095605	Slightly white alabastrum(tetraploid) 2	9.325
	CNS0095606	Slightly white alabastrum(tetraploid) 3	23.332
	CNS0095607	Whole white alabastrum(tetraploid) 1	6.106
	CNS0095608	Whole white alabastrum(tetraploid) 2	7.735
	CNS0095609	Whole white alabastrum(tetraploid) 3	30.375
	CNS0095610	Silvery flower (tetraploid) 1	18.210
	CNS0095611	Silvery flower (tetraploid) 2	25.817
	CNS0095612	Silvery flower (tetraploid) 3	11.781
	CNS0095613	Golden flower (tetraploid) 1	5.408
	CNS0095614	Golden flower (tetraploid) 2	11.641
	CNS0095615	Golden flower (tetraploid) 3	3.810
CRA001975	CRR073297	Stem 1	27.270
	CRR073298	Stem 2	27.836
	CRR073299	Stem 3	28.073
	CRR073300	Leaf 1	42.920
	CRR073301	Leaf 2	34.293
	CRR073302	Leaf 3	45.197
	CRR073303	Juvenile bud 1	42.771
	CRR073304	Juvenile bud 2	36.907
	CRR073305	Juvenile bud 3	39.126
	CRR073306	Third green 1	3.398
	CRR073307	Third green 2	3.602
	CRR073308	Third green 3	4.363
	CRR073309	Second white 1	9.162
	CRR073310	Second white 2	4.640
	CRR073311	Second white 3	5.118
	CRR073312	Silver flowering 1	3.419
	CRR073313	Silver flowering 2	4.897
	CRR073314	Silver flowering 3	3.566
	CRR073315	Gold flowering 1	37.662
	CRR073316	Gold flowering 2	48.495
	CRR073317	Gold flowering 3	42.553
	CRR073318	Tawny withering 1	14.016
	CRR073319	Tawny withering 2	8.524
	CRR073320	Tawny withering 3	13.158