Gene detail

Detail information of GWHGAAZE008008

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	KCW64822.1	1.1611E-116	hypothetical protein EUGRSUZ_G02395 [Eucalyptus grandis]
Swissprot	tr\|O82567\|AAPT1_ARATH	2E-107	Choline/ethanolaminephosphotransferase 1
trEMBL	tr\|A0A059BF30\|A0A059BF30_EUCGR	4E-117	Uncharacterized protein {ECO:0000313\|EMBL:KCW64822.1}
TAIR10	AT1G13560.2	2E-88	aminoalcoholphosphotransferase 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	59300617	59311357	+
GWHAAZE00000002	mRNA	59300617	59311357	+
GWHAAZE00000002	exon	59300617	59300667	+
GWHAAZE00000002	exon	59300956	59301031	+
GWHAAZE00000002	exon	59301148	59301170	+
GWHAAZE00000002	exon	59301251	59301351	+
GWHAAZE00000002	exon	59302096	59302131	+
GWHAAZE00000002	exon	59303982	59304076	+
GWHAAZE00000002	exon	59304216	59304284	+
GWHAAZE00000002	exon	59306710	59306779	+
GWHAAZE00000002	exon	59308139	59308223	+
GWHAAZE00000002	exon	59308988	59309050	+
GWHAAZE00000002	exon	59311235	59311357	+
GWHAAZE00000002	CDS	59300617	59300667	+
GWHAAZE00000002	CDS	59300956	59301031	+
GWHAAZE00000002	CDS	59301148	59301170	+
GWHAAZE00000002	CDS	59301251	59301351	+
GWHAAZE00000002	CDS	59302096	59302131	+
GWHAAZE00000002	CDS	59303982	59304076	+
GWHAAZE00000002	CDS	59304216	59304284	+
GWHAAZE00000002	CDS	59306710	59306779	+
GWHAAZE00000002	CDS	59308139	59308223	+
GWHAAZE00000002	CDS	59308988	59309050	+
GWHAAZE00000002	CDS	59311235	59311357	+

Transcript Sequence
>GWHTAAZE008016 ATGTACATGCCATATGGGAAGGATTCAAGGACATGGATGGTGGAGAGAAAAACTTTTGATGCTGTTGATGGGAAGCAAGCAAGACGGACAAATTCCTCTAGTCCATTAGGAGAGCTTTTTGATCATGGATGTGATGCACTTGCATGTGCGTTTGAGGCCTTGGCTTTTGGGAGCACTGCTATGTGCGGAAGAAGTACTTTCTGGTTTTGGGTGATTTCAGCTGTTCCATTTTATGGTGCAACATGGGAACAGGTGGATTTCCCATCTGGACCAGTCTGTATGGACAGCTATTTCACCAATACCCTTATTCTTCCAGCCCTAAATGGACCTACTGAGGGTCTCATGGTGATATATATGAGCCACTTCTTTACGGCTATAGTTGGTGCTGAGTGGTGGGTTCAACAGTACGGAAAATCACTTCCCCTTTTGAGTTGGGTTCCATTCATAAATGAACTCCCGACATATGGAGCTGTGTTGATTTCAGTGATAGCTTTTGCTATTATTCCAACATTTTTGTACAAGGATTATTTGTCCCCCTATGATATAATGGGTAACTATCCACATTTGGTTGTGATGGGAACTGGGCTTGCGTTTGGGTTCCTTGTGGGAAGGATGATTCTGGCTCACTTGTGTGATGAACCCAAGGGCTTGAAAACTAATATGTGCATGCTTAATGAAAGGAAAATATATCCATCTGTTTCATTACATTCTGGAATGTCATTACACCTTATCCAAGCCATTGGACTTTCTCCACTAATGAAAGTGCCTTCATTTGTGACAGAATTCCCTTAG

Network for GWHGAAZE008008

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01066.22	CDP-OH_P_transf	18	45	5.10E-09

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00993	EPT1	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Glycerophospholipid metabolism	map00564
		Ether lipid metabolism	map00565
		Phosphonate and phosphinate metabolism	map00440

Gene Ontology

GO term	Ontology	Name
GO:0008654	biological_process	phospholipid biosynthetic process
GO:0016020	cellular_component	membrane
GO:0016780	molecular_function	phosphotransferase activity, for other substituted phosphate groups

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.721
	SRR3591706	second leaf	0.009
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.222
	SRR3591709	Stem	0.136
	SRR3591710	White floral bud	2.653
	SRR3591711	White flower	0.000
	SRR3591712	Green floral bud	10.742
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	1.437
	SRR8316896	Juvenile bud stage	4.829
	SRR8316897	Juvenile bud stage	2.937
	SRR8316894	Third green stage	2.090
	SRR8316900	Third green stage	11.160
	SRR8316901	Third green stage	8.357
	SRR8316898	Complete white stage	0.220
	SRR8316899	Complete white stage	0.413
	SRR8316903	Complete white stage	0.221
	SRR8316902	Silver flowering stage	0.054
	SRR8316904	Silver flowering stage	0.142
	SRR8316905	Silver flowering stage	0.084
	SRR8316906	Gold flowering stage	0.082
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.032
SRP132670	SRR6706286	Control	2.249
	SRR6706287	Light intensity 50%	2.539
	SRR6706288	Light intensity 20%	2.832
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	10.362
	CNS0095593	Slightly white alabastrum(diploid) 2	6.299
	CNS0095594	Slightly white alabastrum(diploid) 3	8.664
	CNS0095595	Whole white alabastrum(diploid) 2	16.173
	CNS0095596	Whole white alabastrum(diploid) 3	21.978
	CNS0095597	Whole white alabastrum(diploid) 4	14.730
	CNS0095598	Silvery flower (diploied) 1	0.082
	CNS0095599	Silvery flower (diploied) 2	0.053
	CNS0095600	Silvery flower (diploied) 3	0.085
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.102
	CNS0095603	Golden flower (diploid) 3	0.106
	CNS0095604	Slightly white alabastrum(tetraploid) 1	22.429
	CNS0095605	Slightly white alabastrum(tetraploid) 2	21.280
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.592
	CNS0095607	Whole white alabastrum(tetraploid) 1	26.882
	CNS0095608	Whole white alabastrum(tetraploid) 2	27.463
	CNS0095609	Whole white alabastrum(tetraploid) 3	13.348
	CNS0095610	Silvery flower (tetraploid) 1	0.187
	CNS0095611	Silvery flower (tetraploid) 2	0.690
	CNS0095612	Silvery flower (tetraploid) 3	0.351
	CNS0095613	Golden flower (tetraploid) 1	0.164
	CNS0095614	Golden flower (tetraploid) 2	0.821
	CNS0095615	Golden flower (tetraploid) 3	0.364
CRA001975	CRR073297	Stem 1	2.016
	CRR073298	Stem 2	3.121
	CRR073299	Stem 3	1.498
	CRR073300	Leaf 1	5.550
	CRR073301	Leaf 2	5.178
	CRR073302	Leaf 3	2.786
	CRR073303	Juvenile bud 1	4.200
	CRR073304	Juvenile bud 2	3.149
	CRR073305	Juvenile bud 3	0.413
	CRR073306	Third green 1	0.861
	CRR073307	Third green 2	0.781
	CRR073308	Third green 3	0.434
	CRR073309	Second white 1	0.107
	CRR073310	Second white 2	0.108
	CRR073311	Second white 3	0.096
	CRR073312	Silver flowering 1	0.845
	CRR073313	Silver flowering 2	0.498
	CRR073314	Silver flowering 3	0.251
	CRR073315	Gold flowering 1	0.131
	CRR073316	Gold flowering 2	0.033
	CRR073317	Gold flowering 3	0.933
	CRR073318	Tawny withering 1	0.339
	CRR073319	Tawny withering 2	2.416
	CRR073320	Tawny withering 3	0.817