Detail information of GWHGAAZE007973


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010274930.10PREDICTED: 2-isopropylmalate synthase A-like [Nelumbo nucifera]
Swissprottr|O04973|LEU1A_SOLPN02-isopropylmalate synthase A
trEMBLtr|K4CJ46|K4CJ46_SOLLC0Uncharacterized protein {ECO:0000313|EnsemblPlants:Solyc08g014130.2.1}
TAIR10AT1G74040.12E-1702-isopropylmalate synthase 1

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene5834077858349740-
GWHAAZE00000002mRNA5834077858349740-
GWHAAZE00000002exon5834077858340785-
GWHAAZE00000002exon5834092258341027-
GWHAAZE00000002exon5834151858341652-
GWHAAZE00000002exon5834203458342123-
GWHAAZE00000002exon5834268158342755-
GWHAAZE00000002exon5834288458342917-
GWHAAZE00000002exon5834489158344991-
GWHAAZE00000002exon5834538458345470-
GWHAAZE00000002exon5834638658346478-
GWHAAZE00000002exon5834681358346893-
GWHAAZE00000002exon5834885358349066-
GWHAAZE00000002exon5834920858349740-
GWHAAZE00000002CDS5834920858349740-
GWHAAZE00000002CDS5834885358349066-
GWHAAZE00000002CDS5834681358346893-
GWHAAZE00000002CDS5834638658346478-
GWHAAZE00000002CDS5834538458345470-
GWHAAZE00000002CDS5834489158344991-
GWHAAZE00000002CDS5834288458342917-
GWHAAZE00000002CDS5834268158342755-
GWHAAZE00000002CDS5834203458342123-
GWHAAZE00000002CDS5834151858341652-
GWHAAZE00000002CDS5834092258341027-
GWHAAZE00000002CDS5834077858340785-
Transcript Sequence

Network for GWHGAAZE007973

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00682.20HMGL-like283086.60E-86
PF08502.11LeuA_dimer4095147.70E-14
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K01649leuA, IMS Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
2-Oxocarboxylic acid metabolismmap01210
Biosynthesis of amino acidsmap01230
Pyruvate metabolismmap00620
Valine, leucine and isoleucine biosynthesismap00290

Gene Ontology

GO term OntologyName
GO:0019752biological_processcarboxylic acid metabolic process
GO:0009098biological_processleucine biosynthetic process
GO:0003824molecular_functioncatalytic activity
GO:0046912molecular_functiontransferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer
GO:0003852molecular_function2-isopropylmalate synthase activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.286
SRR3591706second leaf28.626
SRR3591707mature leaf13.607
SRR3591708Shoot apex3.438
SRR3591709Stem0.212
SRR3591710White floral bud0.050
SRR3591711White flower0.048
SRR3591712Green floral bud0.033
SRR3591713Yellow flower0.000
SRP173429 SRR8316895Juvenile bud stage 0.056
SRR8316896Juvenile bud stage 0.043
SRR8316897Juvenile bud stage 0.000
SRR8316894Third green stage 0.060
SRR8316900Third green stage 0.077
SRR8316901Third green stage 0.102
SRR8316898Complete white stage 0.000
SRR8316899Complete white stage 0.000
SRR8316903Complete white stage 0.000
SRR8316902Silver flowering stage0.000
SRR8316904Silver flowering stage0.000
SRR8316905Silver flowering stage0.000
SRR8316906Gold flowering stage 0.000
SRR8316907Gold flowering stage 0.000
SRR8316908Gold flowering stage 0.000
SRP132670SRR6706286Control0.222
SRR6706287Light intensity 50%0.236
SRR6706288Light intensity 20%0.301
CNP0000432CNS0095592Slightly white alabastrum(diploid) 10.007
CNS0095593Slightly white alabastrum(diploid) 20.000
CNS0095594Slightly white alabastrum(diploid) 30.000
CNS0095595Whole white alabastrum(diploid) 20.028
CNS0095596Whole white alabastrum(diploid) 30.065
CNS0095597Whole white alabastrum(diploid) 40.000
CNS0095598Silvery flower (diploied) 10.000
CNS0095599Silvery flower (diploied) 20.000
CNS0095600Silvery flower (diploied) 30.002
CNS0095601Golden flower (diploid) 10.000
CNS0095602Golden flower (diploid) 20.000
CNS0095603Golden flower (diploid) 30.000
CNS0095604Slightly white alabastrum(tetraploid) 10.044
CNS0095605Slightly white alabastrum(tetraploid) 20.117
CNS0095606Slightly white alabastrum(tetraploid) 30.164
CNS0095607Whole white alabastrum(tetraploid) 10.000
CNS0095608Whole white alabastrum(tetraploid) 20.000
CNS0095609Whole white alabastrum(tetraploid) 30.190
CNS0095610Silvery flower (tetraploid) 10.000
CNS0095611Silvery flower (tetraploid) 20.000
CNS0095612Silvery flower (tetraploid) 30.000
CNS0095613Golden flower (tetraploid) 10.000
CNS0095614Golden flower (tetraploid) 20.000
CNS0095615Golden flower (tetraploid) 30.000
CRA001975CRR073297Stem 10.109
CRR073298Stem 20.189
CRR073299Stem 30.140
CRR073300Leaf 10.253
CRR073301Leaf 20.363
CRR073302Leaf 30.192
CRR073303Juvenile bud 10.141
CRR073304Juvenile bud 20.000
CRR073305Juvenile bud 30.000
CRR073306Third green 10.000
CRR073307Third green 20.000
CRR073308Third green 30.000
CRR073309Second white 10.000
CRR073310Second white 20.000
CRR073311Second white 30.000
CRR073312Silver flowering 10.000
CRR073313Silver flowering 20.000
CRR073314Silver flowering 30.000
CRR073315Gold flowering 10.000
CRR073316Gold flowering 20.000
CRR073317Gold flowering 30.000
CRR073318Tawny withering 10.000
CRR073319Tawny withering 20.000
CRR073320Tawny withering 30.000