Gene detail

Detail information of GWHGAAZE007963

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP19913.1	2.3663E-154	unnamed protein product [Coffea canephora]
Swissprot	tr\|P42734\|CADH9_ARATH	4E-146	Probable cinnamyl alcohol dehydrogenase 9
trEMBL	tr\|A0A068VJR3\|A0A068VJR3_COFCA	9E-155	Coffea canephora DH200=94 genomic scaffold, scaffold_783 {ECO:0000313\|EMBL:CDP19913.1}
TAIR10	AT4G39330.1	3E-112	cinnamyl alcohol dehydrogenase 9

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	57841249	57850335	+
GWHAAZE00000002	mRNA	57841249	57850335	+
GWHAAZE00000002	exon	57841249	57841416	+
GWHAAZE00000002	exon	57843277	57843395	+
GWHAAZE00000002	exon	57846089	57846159	+
GWHAAZE00000002	exon	57846309	57846596	+
GWHAAZE00000002	exon	57848373	57848487	+
GWHAAZE00000002	exon	57849747	57850335	+
GWHAAZE00000002	five_prime_UTR	57841249	57841318	+
GWHAAZE00000002	CDS	57841319	57841416	+
GWHAAZE00000002	CDS	57843277	57843395	+
GWHAAZE00000002	CDS	57846089	57846159	+
GWHAAZE00000002	CDS	57846309	57846596	+
GWHAAZE00000002	CDS	57848373	57848487	+
GWHAAZE00000002	CDS	57849747	57849946	+
GWHAAZE00000002	three_prime_UTR	57849947	57850335	+

Transcript Sequence
>GWHTAAZE007971 CACTACTCATCGCATTACTGTCTCTCCATTCTATTTTCACATTCACAAACCCCAATAAGATAAAACATTAATGGCGAAATCACCAGAGCAAGAACACCCACAAAAAGCTTTTGGCTGGGCTGCAACAGACACCTCTGGAAACATTTCTCCTTTCAATTTCTCTCGCAGAGAACCTGGCAATGAAGATGTGGCAGTCAAAATACTTTACTGTGGGGTTTGCCACTCGGACCTGCATACTGCAAAGAATGAATGGGGATTCACAAATTACCCTGTTGTTCCAGGGTATGGCGAGATTGTTGGTCAAGTGGCGAAGGTGGGGAACAACGTCACCAAGTTCAGAGTTGGTGACCGAGTTGGGCGGTTCGTGCTCCGCTACCCTGATAACCTACCCCCTGACTCCGGTGCACCACTCCTGTGTGCTGGGATCACCGTTTACAGCCCAATGAAATACTATGGAATGACCGAGCCAGGCAAGCACCTGGGTGTGGCTGGGCTCGGTGGGCTTGGTCATGTTGCTGTGAAGTTCGGGAAGGCCTTTGGGCTCAAAGTTACTGTCATTAGTACCTCTTCGAAGAAGGAAGACGAGGCCATCAAAAAGCTTGGTGCTGATTCTTTCCTTCTTAGCTCTGATCCTGCAAAAATGAATTTGCTGCAGTTCATCCCTGCCCCATTGATTAGTCTGCTGAAGTTGAATGGAAAACTTATTACTGTGGGCCTTCCTGAGAAGCCCCTTGAGCTACCTATCTTCCCCTTGGTTCTTGGGAGGAAGCTTGTGGGAGGAAGCAACATTGGAGGGATGAAAGAGACGCAAGAGATGCTCGACTTTTGCGCAAAGAACAACATAACTGTGGATATTGAGCTGATCAAGATGGATTACATCAACACTGCATTTGAACGCCTCACCAAATCCGATGTCAGGTATCGCTTTGTGGTCGATGTGGCAAACTCCTTGCCTAAATAAATTATCAGACCCAATACCCATCCATCCATCCATCCATCTGCCATTGCCTCCCTTGTTCAGAGGCCTCAATTTCTAGATTTTTTAGACCACATGAGATTTGGCTTCCTATGATGCTTGATTCGGCTTAATGTAGTAGTACTTACTGCATTTATGCAAACAATTTTGAACTTTGGCATTGTATGCGGCAGCGTCTTTGCCCAATTCAACTGGACTTGTGTTTTATGATTCATTACAATTGTATTATTTGGCCTACTACTCTAATTGCGATAATGCGAGGTCTGCATTTTTTTGGTGTTCTGAACACCAAGCCCCCCTCGGCGAGTGTAGAATCTGGCAAAAAATTTGCTTGGGAGTATTTGGTGGTTAGTTAGTTTCTATAGAGTCTATGT

Network for GWHGAAZE007963

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08240.13	ADH_N	38	96	1.30E-14

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00083	CAD	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Phenylpropanoid biosynthesis	map00940

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0016491	molecular_function	oxidoreductase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.779
	SRR3591706	second leaf	1.296
	SRR3591707	mature leaf	0.240
	SRR3591708	Shoot apex	1.229
	SRR3591709	Stem	0.565
	SRR3591710	White floral bud	3.400
	SRR3591711	White flower	1.024
	SRR3591712	Green floral bud	22.285
	SRR3591713	Yellow flower	0.153
SRP173429	SRR8316895	Juvenile bud stage	31.093
	SRR8316896	Juvenile bud stage	43.218
	SRR8316897	Juvenile bud stage	17.297
	SRR8316894	Third green stage	10.973
	SRR8316900	Third green stage	28.764
	SRR8316901	Third green stage	41.202
	SRR8316898	Complete white stage	2.109
	SRR8316899	Complete white stage	5.929
	SRR8316903	Complete white stage	3.109
	SRR8316902	Silver flowering stage	2.142
	SRR8316904	Silver flowering stage	2.508
	SRR8316905	Silver flowering stage	0.791
	SRR8316906	Gold flowering stage	3.091
	SRR8316907	Gold flowering stage	3.030
	SRR8316908	Gold flowering stage	1.391
SRP132670	SRR6706286	Control	11.782
	SRR6706287	Light intensity 50%	12.496
	SRR6706288	Light intensity 20%	11.358
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	44.466
	CNS0095593	Slightly white alabastrum(diploid) 2	26.721
	CNS0095594	Slightly white alabastrum(diploid) 3	56.191
	CNS0095595	Whole white alabastrum(diploid) 2	27.820
	CNS0095596	Whole white alabastrum(diploid) 3	31.365
	CNS0095597	Whole white alabastrum(diploid) 4	22.161
	CNS0095598	Silvery flower (diploied) 1	2.438
	CNS0095599	Silvery flower (diploied) 2	2.724
	CNS0095600	Silvery flower (diploied) 3	4.583
	CNS0095601	Golden flower (diploid) 1	3.333
	CNS0095602	Golden flower (diploid) 2	3.225
	CNS0095603	Golden flower (diploid) 3	2.244
	CNS0095604	Slightly white alabastrum(tetraploid) 1	74.293
	CNS0095605	Slightly white alabastrum(tetraploid) 2	75.523
	CNS0095606	Slightly white alabastrum(tetraploid) 3	5.914
	CNS0095607	Whole white alabastrum(tetraploid) 1	69.353
	CNS0095608	Whole white alabastrum(tetraploid) 2	61.859
	CNS0095609	Whole white alabastrum(tetraploid) 3	44.140
	CNS0095610	Silvery flower (tetraploid) 1	4.779
	CNS0095611	Silvery flower (tetraploid) 2	5.827
	CNS0095612	Silvery flower (tetraploid) 3	6.138
	CNS0095613	Golden flower (tetraploid) 1	1.873
	CNS0095614	Golden flower (tetraploid) 2	3.782
	CNS0095615	Golden flower (tetraploid) 3	2.026
CRA001975	CRR073297	Stem 1	41.254
	CRR073298	Stem 2	29.488
	CRR073299	Stem 3	33.673
	CRR073300	Leaf 1	17.767
	CRR073301	Leaf 2	24.995
	CRR073302	Leaf 3	23.138
	CRR073303	Juvenile bud 1	14.161
	CRR073304	Juvenile bud 2	13.102
	CRR073305	Juvenile bud 3	8.609
	CRR073306	Third green 1	3.796
	CRR073307	Third green 2	5.228
	CRR073308	Third green 3	2.992
	CRR073309	Second white 1	4.724
	CRR073310	Second white 2	3.669
	CRR073311	Second white 3	3.676
	CRR073312	Silver flowering 1	2.946
	CRR073313	Silver flowering 2	5.472
	CRR073314	Silver flowering 3	2.315
	CRR073315	Gold flowering 1	14.051
	CRR073316	Gold flowering 2	13.667
	CRR073317	Gold flowering 3	13.146
	CRR073318	Tawny withering 1	5.236
	CRR073319	Tawny withering 2	7.021
	CRR073320	Tawny withering 3	3.435