Gene detail

Detail information of GWHGAAZE007950

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009800501.1	0	PREDICTED: 2-isopropylmalate synthase A [Nicotiana sylvestris]
Swissprot	tr\|O04973\|LEU1A_SOLPN	0	2-isopropylmalate synthase A
trEMBL	tr\|K4CJ46\|K4CJ46_SOLLC	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Solyc08g014130.2.1}
TAIR10	AT1G74040.1	2E-148	2-isopropylmalate synthase 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	57530712	57538953	-
GWHAAZE00000002	mRNA	57530712	57538953	-
GWHAAZE00000002	exon	57530712	57530864	-
GWHAAZE00000002	exon	57531257	57531346	-
GWHAAZE00000002	exon	57531905	57531979	-
GWHAAZE00000002	exon	57532108	57532141	-
GWHAAZE00000002	exon	57534111	57534211	-
GWHAAZE00000002	exon	57534607	57534693	-
GWHAAZE00000002	exon	57535605	57535697	-
GWHAAZE00000002	exon	57536033	57536113	-
GWHAAZE00000002	exon	57538069	57538244	-
GWHAAZE00000002	exon	57538485	57538953	-
GWHAAZE00000002	CDS	57538485	57538953	-
GWHAAZE00000002	CDS	57538069	57538244	-
GWHAAZE00000002	CDS	57536033	57536113	-
GWHAAZE00000002	CDS	57535605	57535697	-
GWHAAZE00000002	CDS	57534607	57534693	-
GWHAAZE00000002	CDS	57534111	57534211	-
GWHAAZE00000002	CDS	57532108	57532141	-
GWHAAZE00000002	CDS	57531905	57531979	-
GWHAAZE00000002	CDS	57531257	57531346	-
GWHAAZE00000002	CDS	57530712	57530864	-

Transcript Sequence
>GWHTAAZE007958 ATGAAGGCAACTACTACGTATTGTTGCACGTTCAACCATCAACCTCTTTACATTCCAAATAAAATATTGAACGACTCGTACGTTAGGGTTCTTGACAGTAGCCTCCGAGATGGAGAGCAAGCCCCCGGGGCTACCATGACCCCGAATCAAAAGCTAGCCATTGCTCGCCAGCTTGCAAAACTTGGGGTTGACATTATAGAAGCCGGCTTCCCGGTATCATCACCTTCTGAATTTGAAGCAACACGAATGATCGCAATGGAGATTGGTAACACTGTTAATGACAAGACTGGCCGTGTACCCGTCATCACTGGACTGTCAAGGTTGACACGCAAGGATATTGATGTAACATGGGAGGCTCTAAAGGGTGCGAAGTACCCGCGGCTGTTCACATTTATTCCATCAAGTGAGATTCACATGAAGTATAAGATAAAAAGTCAAAGAAGAGGTTTTGAGGAGTGTCAAGGAGTTGCCATAAAAGCTGGGGCAACCACTATTGCTTTTGCTGACACTGTGGGATGTACACTTCCAAATGAATGGGGCCAATTTATAGCTGATATGAAGGCAAATATTGTTGGGGTGGAAAATGTAATTATAGCAACTCATTGCCATGATGATCGTGGGTTTGCCACTGCAAATACATTAGCAGCTGTAAATGCAGGTGCTAGGGAAGTACATGTGACTATGAATGGCATTGGTGAAAGAGCTGGAAATGCTCCATTGGAAGAGTTTGTTATGGCTCTAAAATCACGAGGAAAAGATCTCCTAGGTGGTCTGTACACCGGAATCAATTCGAGACATATTTTAAAAGCTAGTAAGATGGTGGAAGAGCACAGTGGATTGTCCGTGCAACCAAATAAAGCCATAGTTGGAGCTAATGCCTTTTCTCATGGAAGTGGAATCCACCAGGATGGAGTACTTAAAAATAGATCTACATACGAGTTTCTTTCCCGTGAAGAAATTGGTTGGTCTCCCTCTCCTCATAAGGGTATTGTCCTTGGGAAACTCAGCGGTCGACATGCATTGAAATCCCGATTTCTAGAGCTTGGCTATGAATTGGATACCCAAAAATTTGATGATGCTTTTAGGCGTTTCAAATTACTAGCTGAAAAGAAAAAGATTCTCTCGGATAATGATTTGGTACTATTAATGAGCGATGGTGATGAAACATTGCAACCAGAAGTGACGTGGAAGCTGACTGACATGGAGGTTAAAAGCAGCACTAATAGTCTCTCGAGGGCAACAATTAAACTAATTGATGCTTGTGGAAAAGAGCATGTTGCTTGTGGAGTTGGGACAAACTCAATCCATGCGGCTTGCAAAGCAATTGATGACATTGTTAAGGTAATACTTTTTGAGTAA

Network for GWHGAAZE007950

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00682.20	HMGL-like	28	147	1.50E-29
PF00682.20	HMGL-like	156	274	5.90E-36
PF08502.11	LeuA_dimer	375	448	6.30E-08

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01649	leuA, IMS	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		2-Oxocarboxylic acid metabolism	map01210
		Biosynthesis of amino acids	map01230
		Pyruvate metabolism	map00620
		Valine, leucine and isoleucine biosynthesis	map00290

Gene Ontology

GO term	Ontology	Name
GO:0019752	biological_process	carboxylic acid metabolic process
GO:0009098	biological_process	leucine biosynthetic process
GO:0003824	molecular_function	catalytic activity
GO:0046912	molecular_function	transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer
GO:0003852	molecular_function	2-isopropylmalate synthase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.077
	SRR3591706	second leaf	14.874
	SRR3591707	mature leaf	8.069
	SRR3591708	Shoot apex	1.888
	SRR3591709	Stem	0.062
	SRR3591710	White floral bud	0.000
	SRR3591711	White flower	0.000
	SRR3591712	Green floral bud	0.000
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.000
	SRR8316896	Juvenile bud stage	0.000
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.025
	SRR8316900	Third green stage	0.032
	SRR8316901	Third green stage	0.094
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.000
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.096
	SRR6706287	Light intensity 50%	0.217
	SRR6706288	Light intensity 20%	0.129
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.000
	CNS0095593	Slightly white alabastrum(diploid) 2	0.000
	CNS0095594	Slightly white alabastrum(diploid) 3	0.000
	CNS0095595	Whole white alabastrum(diploid) 2	0.070
	CNS0095596	Whole white alabastrum(diploid) 3	0.000
	CNS0095597	Whole white alabastrum(diploid) 4	0.000
	CNS0095598	Silvery flower (diploied) 1	0.000
	CNS0095599	Silvery flower (diploied) 2	0.000
	CNS0095600	Silvery flower (diploied) 3	0.000
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.000
	CNS0095603	Golden flower (diploid) 3	0.000
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.057
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.000
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.038
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.143
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.000
	CNS0095612	Silvery flower (tetraploid) 3	0.000
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.083
	CRR073298	Stem 2	0.058
	CRR073299	Stem 3	0.011
	CRR073300	Leaf 1	0.240
	CRR073301	Leaf 2	0.356
	CRR073302	Leaf 3	0.142
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.000