Gene detail

Detail information of GWHGAAZE007896

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011021882.1	1.0697E-155	PREDICTED: apoptotic chromatin condensation inducer in the nucleus-like isoform X2 [Populus euphratica]
trEMBL	tr\|B9H574\|B9H574_POPTR	1E-154	SAP domain-containing family protein {ECO:0000313\|EMBL:EEE93325.1}
TAIR10	AT4G39680.2	7E-57	SAP domain-containing protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	55700979	55705826	+
GWHAAZE00000002	mRNA	55700979	55705826	+
GWHAAZE00000002	exon	55700979	55702491	+
GWHAAZE00000002	exon	55703872	55704066	+
GWHAAZE00000002	exon	55705062	55705165	+
GWHAAZE00000002	exon	55705335	55705826	+
GWHAAZE00000002	CDS	55700979	55702491	+
GWHAAZE00000002	CDS	55703872	55704066	+
GWHAAZE00000002	CDS	55705062	55705165	+
GWHAAZE00000002	CDS	55705335	55705826	+

Transcript Sequence
>GWHTAAZE007904 ATGTCTTCGAAATATCCCATCCTTGACAATAAACCAATTGATCAATGGAAGGTCACGGAACTGAAAGAGGAACTTAGGAGAAGGAAATTTCCCGTGAAGGGGTTGAAAGATGATTTGATAAAGCGATTGGATGAAGCGCTTCGCGCTGAAAGCGGAAGTGCTAAAGATTCTGTTGATAATGGCCTTGATTGTGATCAGCACGTGGTTCAGTCCGAAGATGGAAGCACAGCCCCCGATGCTGCTGAAAAAACGAGGGACATTATCGACGAGGGTGATAACAAGAATGAAGAAACTGAAAACACAAGGGATATTATCGATGAGAGTGATAATAAGAATGCAGAATCTAAAACAATGAGGGTCATTATCGATGAGAGTGATAACAAGAATGAAGAAACTGGAAAAACAAGGGGCATTATCGGTGAGTGTGATAACAGGAATGAAGAAACTGAAGCAACGAGGGACATTGTTGAGGAGAGTGAAAACAAGAATGAAGTAACTGAAACAACAGGGAACATTATTGATGAGAGTTATGACAAGAATGAAGTAACTGAAACAACAGGGAACATTATTGATGAGAGTTATGACAAGAATGAAGAAATTGGGGACGCTATAGTTGAGAATGGCAAAAAGATTGGGCTTGTGGACAGTGATAAAATTCAGGTCGACAAAGATGTTGGTTTGTGGTCTCTGGACAAAGAAAATATTTCAGAGAGAGAATCAGTCAGTGGTAATGATTCTACTGGGGTGGAAGGGGAGCGGGAGCTGGTGGTCCAAGAAACAACTGTTGAAACTACTGTCGAAACTACTGTCACAGTTAGTGAGAGCGTGGCGACCGAAATTGCGCTTAGTGGGCCAGAGTTCCAGAACAGTGAAACCCAGAACTTGCAGCTGGTGAATGAGGAGGATTCAAGGCCTCCACAAGAGGAAGCGAAGTTCGATTCATCTGATTTTAACAACAACCAGGTATTTGAGGTCAGCCAAGTAAAATCTGATTCTATTTCTACTGATACTACTGTCTCAATTAATGAAAAGAATGAACTACTAAAGGATAATGTAATTGCTGATGATGTCAAATTAGAACTTGATGATGTTAAGCCTGAGATTGCACAGCCATTATCATCCGACAATATTGTTGTGGATAGTGGCAAGTTACAAGCAATGGATGTTGATGAGCTAAAGGAAAGCAAGGTTACTGATGAGGGTACAAGTGGCAACAATGCTGAAAGTGCAGATGTGGGAAAGAAAAATGATAGTGGAGATGTGGGTTCTGCAGAAAAGTTAAATTTAGATCGAAGTTCTGGTGATGATTCTATGGAGGAGGATGTTTTGGAGAGTAAGGAAATTGATTTGAAGTTTAATTCTGATGAAGTGTGTGAGAAAAATGAGGTGCCTGTGGTGAAGGAGGATGGTGCTGTTGGTGTTATTGTTGAGGATTTACCTGATGACAAGAAAAGTGTTAGCGCTAATGATAATAGTGGACCTGCCGGGTCAGATGTCAAAAGAAAGTTTAATGGTCAAGAAACTGCGGTCAACAATGAGAGTACAAAGAGACAGAGAAGGTGGAAGACTGAAGGCCTGAAAGTCATTGAACCCCAAAATATTTTGCCTTCTACTACTACACCTAAAGATGCATTCCTGCCCATTGGAAAGCGGAGCTTCTCTAGGTCCAATTCTATGGCTAGTGTGGAAACACCGAAGGACCGTGTTGTTCCACCATCATCAAAGCCTTTGACTAATTCTCTCAGAATTGATCGGTTTCTGCGTCCGTTTACCTTGAAAGCCGTGCAAGAACTTCTAGGCAAAACTGGCAATTATTCATCTGTTGAAGAAGCTGTGGAGACTCGAAATGCTGTTTACAACCTACAATGGCCTCCAAACGGGGGGCGCCTGCTGGTGGCCGAGTTTGTTGATCCCCAGGAAGTTAAAACACGTGCGGAGGGTCCTCCTCCATCTCCGGCAACTCCCGCCACCACTTCTACTACTCTCCCACCGCCACCACCAGCAGCAGCCACCTCCACCAAGAAGCCCTCCCCTACCCCCTCCCCACGCCTACAGGTGCAGAGGCAGCAGCTCCCGCCCCCTCCTTCGCTGCCCCCTCCGCCACCTCTATCTAACCCACCCCCAATAAGGGAACGGCCCCTCCCGCCCCCACCCCCACTTCCCGAGAAAGTTGACCCTCCGATTGTCACTCTGGACGATCTTTTTAGGAAGACAAAAGCGACCCCACGCATCTACTATCTACCACTGTCAGATGAAGAAGTTGCAGCAAAGGTCAAGGCACAGGGAAAAACTGCTGTGCAGTAG

Network for GWHGAAZE007896

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02037.28	SAP	14	47	1.60E-10
PF16294.6	RSB_motif	724	762	2.70E-13

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12875	ACIN1, ACINUS	Spliceosome	map03040
		RNA transport	map03013
		mRNA surveillance pathway	map03015

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	34.453
	SRR3591706	second leaf	26.975
	SRR3591707	mature leaf	29.906
	SRR3591708	Shoot apex	34.248
	SRR3591709	Stem	42.274
	SRR3591710	White floral bud	40.331
	SRR3591711	White flower	42.153
	SRR3591712	Green floral bud	33.217
	SRR3591713	Yellow flower	33.558
SRP173429	SRR8316895	Juvenile bud stage	33.730
	SRR8316896	Juvenile bud stage	46.848
	SRR8316897	Juvenile bud stage	21.733
	SRR8316894	Third green stage	18.621
	SRR8316900	Third green stage	41.903
	SRR8316901	Third green stage	41.636
	SRR8316898	Complete white stage	12.895
	SRR8316899	Complete white stage	50.374
	SRR8316903	Complete white stage	33.391
	SRR8316902	Silver flowering stage	19.161
	SRR8316904	Silver flowering stage	29.993
	SRR8316905	Silver flowering stage	14.149
	SRR8316906	Gold flowering stage	45.682
	SRR8316907	Gold flowering stage	43.091
	SRR8316908	Gold flowering stage	42.152
SRP132670	SRR6706286	Control	50.170
	SRR6706287	Light intensity 50%	42.960
	SRR6706288	Light intensity 20%	40.930
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	29.877
	CNS0095593	Slightly white alabastrum(diploid) 2	25.694
	CNS0095594	Slightly white alabastrum(diploid) 3	24.934
	CNS0095595	Whole white alabastrum(diploid) 2	22.510
	CNS0095596	Whole white alabastrum(diploid) 3	19.083
	CNS0095597	Whole white alabastrum(diploid) 4	21.895
	CNS0095598	Silvery flower (diploied) 1	41.021
	CNS0095599	Silvery flower (diploied) 2	32.862
	CNS0095600	Silvery flower (diploied) 3	36.226
	CNS0095601	Golden flower (diploid) 1	44.581
	CNS0095602	Golden flower (diploid) 2	37.703
	CNS0095603	Golden flower (diploid) 3	39.964
	CNS0095604	Slightly white alabastrum(tetraploid) 1	44.077
	CNS0095605	Slightly white alabastrum(tetraploid) 2	33.475
	CNS0095606	Slightly white alabastrum(tetraploid) 3	72.018
	CNS0095607	Whole white alabastrum(tetraploid) 1	26.619
	CNS0095608	Whole white alabastrum(tetraploid) 2	16.687
	CNS0095609	Whole white alabastrum(tetraploid) 3	44.576
	CNS0095610	Silvery flower (tetraploid) 1	57.736
	CNS0095611	Silvery flower (tetraploid) 2	50.489
	CNS0095612	Silvery flower (tetraploid) 3	45.777
	CNS0095613	Golden flower (tetraploid) 1	43.432
	CNS0095614	Golden flower (tetraploid) 2	56.040
	CNS0095615	Golden flower (tetraploid) 3	48.497
CRA001975	CRR073297	Stem 1	61.143
	CRR073298	Stem 2	56.626
	CRR073299	Stem 3	20.819
	CRR073300	Leaf 1	61.881
	CRR073301	Leaf 2	57.196
	CRR073302	Leaf 3	18.157
	CRR073303	Juvenile bud 1	19.776
	CRR073304	Juvenile bud 2	12.958
	CRR073305	Juvenile bud 3	29.361
	CRR073306	Third green 1	8.320
	CRR073307	Third green 2	5.952
	CRR073308	Third green 3	10.189
	CRR073309	Second white 1	5.480
	CRR073310	Second white 2	10.125
	CRR073311	Second white 3	8.707
	CRR073312	Silver flowering 1	7.379
	CRR073313	Silver flowering 2	6.919
	CRR073314	Silver flowering 3	8.384
	CRR073315	Gold flowering 1	9.095
	CRR073316	Gold flowering 2	18.341
	CRR073317	Gold flowering 3	4.929
	CRR073318	Tawny withering 1	22.018
	CRR073319	Tawny withering 2	20.421
	CRR073320	Tawny withering 3	20.867