Detail information of GWHGAAZE007868


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010645223.10PREDICTED: calmodulin-binding transcription activator 3 [Vitis vinifera]
Swissprottr|Q8GSA7|CMTA3_ARATH0Calmodulin-binding transcription activator 3
trEMBLtr|F6HWM2|F6HWM2_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CCB59087.1}
TAIR10AT2G22300.20signal responsive 1

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene5481669854835813-
GWHAAZE00000002mRNA5481669854835813-
GWHAAZE00000002exon5483573154835813-
GWHAAZE00000002exon5483497554835039-
GWHAAZE00000002exon5483396454834083-
GWHAAZE00000002exon5482965654829771-
GWHAAZE00000002exon5482943454829522-
GWHAAZE00000002exon5482754854827590-
GWHAAZE00000002exon5482367254823879-
GWHAAZE00000002exon5482336654823479-
GWHAAZE00000002exon5482296754823253-
GWHAAZE00000002exon5482088054821395-
GWHAAZE00000002exon5481969154820367-
GWHAAZE00000002exon5481833154818892-
GWHAAZE00000002exon5481669854817105-
GWHAAZE00000002CDS5483573154835813-
GWHAAZE00000002CDS5483497554835039-
GWHAAZE00000002CDS5483396454834083-
GWHAAZE00000002CDS5482965654829771-
GWHAAZE00000002CDS5482943454829522-
GWHAAZE00000002CDS5482754854827590-
GWHAAZE00000002CDS5482367254823879-
GWHAAZE00000002CDS5482336654823479-
GWHAAZE00000002CDS5482296754823253-
GWHAAZE00000002CDS5482088054821395-
GWHAAZE00000002CDS5481969154820367-
GWHAAZE00000002CDS5481833154818892-
GWHAAZE00000002CDS5481669854817105-
Transcript Sequence

Network for GWHGAAZE007868

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03859.17CG-1571707.40E-49
PF01833.25TIG5326100.0001
PF12796.8Ank_27328226.10E-08
PF00612.28IQ9309490.086
PF00612.28IQ9549739.70E-05
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyCAMTA

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding
GO:0003677molecular_functionDNA binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf19.739
SRR3591706second leaf8.677
SRR3591707mature leaf21.973
SRR3591708Shoot apex13.435
SRR3591709Stem30.871
SRR3591710White floral bud33.796
SRR3591711White flower35.084
SRR3591712Green floral bud25.535
SRR3591713Yellow flower25.093
SRP173429 SRR8316895Juvenile bud stage 9.244
SRR8316896Juvenile bud stage 17.056
SRR8316897Juvenile bud stage 5.824
SRR8316894Third green stage 7.507
SRR8316900Third green stage 15.018
SRR8316901Third green stage 15.484
SRR8316898Complete white stage 9.019
SRR8316899Complete white stage 28.792
SRR8316903Complete white stage 16.399
SRR8316902Silver flowering stage14.329
SRR8316904Silver flowering stage20.315
SRR8316905Silver flowering stage9.722
SRR8316906Gold flowering stage 23.548
SRR8316907Gold flowering stage 24.220
SRR8316908Gold flowering stage 31.384
SRP132670SRR6706286Control14.363
SRR6706287Light intensity 50%13.776
SRR6706288Light intensity 20%14.778
CNP0000432CNS0095592Slightly white alabastrum(diploid) 18.783
CNS0095593Slightly white alabastrum(diploid) 29.919
CNS0095594Slightly white alabastrum(diploid) 38.282
CNS0095595Whole white alabastrum(diploid) 28.330
CNS0095596Whole white alabastrum(diploid) 36.498
CNS0095597Whole white alabastrum(diploid) 47.918
CNS0095598Silvery flower (diploied) 119.679
CNS0095599Silvery flower (diploied) 213.389
CNS0095600Silvery flower (diploied) 325.785
CNS0095601Golden flower (diploid) 115.733
CNS0095602Golden flower (diploid) 227.726
CNS0095603Golden flower (diploid) 327.016
CNS0095604Slightly white alabastrum(tetraploid) 16.784
CNS0095605Slightly white alabastrum(tetraploid) 26.366
CNS0095606Slightly white alabastrum(tetraploid) 315.284
CNS0095607Whole white alabastrum(tetraploid) 16.787
CNS0095608Whole white alabastrum(tetraploid) 26.519
CNS0095609Whole white alabastrum(tetraploid) 310.860
CNS0095610Silvery flower (tetraploid) 130.456
CNS0095611Silvery flower (tetraploid) 228.794
CNS0095612Silvery flower (tetraploid) 358.293
CNS0095613Golden flower (tetraploid) 117.078
CNS0095614Golden flower (tetraploid) 224.961
CNS0095615Golden flower (tetraploid) 324.972
CRA001975CRR073297Stem 118.396
CRR073298Stem 216.322
CRR073299Stem 314.090
CRR073300Leaf 118.110
CRR073301Leaf 215.272
CRR073302Leaf 313.225
CRR073303Juvenile bud 111.343
CRR073304Juvenile bud 29.397
CRR073305Juvenile bud 315.697
CRR073306Third green 19.577
CRR073307Third green 27.925
CRR073308Third green 312.633
CRR073309Second white 113.081
CRR073310Second white 214.045
CRR073311Second white 315.746
CRR073312Silver flowering 112.653
CRR073313Silver flowering 213.070
CRR073314Silver flowering 313.265
CRR073315Gold flowering 120.564
CRR073316Gold flowering 229.617
CRR073317Gold flowering 322.433
CRR073318Tawny withering 124.393
CRR073319Tawny withering 228.272
CRR073320Tawny withering 319.022