Detail information of GWHGAAZE007846


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_007047879.11.141E-146RAB GTPase A4A [Theobroma cacao]
Swissprottr|Q40522|RB11D_TOBAC1E-146Ras-related protein Rab11D
trEMBLtr|A0A061DJB2|A0A061DJB2_THECC4E-147RAB GTPase A4A {ECO:0000313|EMBL:EOX92036.1}
TAIR10AT5G65270.16E-111RAB GTPase homolog A4A

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene5412374754127006-
GWHAAZE00000002mRNA5412374754127006-
GWHAAZE00000002exon5412678054127006-
GWHAAZE00000002exon5412374754124191-
GWHAAZE00000002CDS5412678054127006-
GWHAAZE00000002CDS5412374754124191-
Transcript Sequence

Network for GWHGAAZE007846

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00071.23Ras171763.00E-61
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K07904RAB11A Endocytosis map04144
Pancreatic secretionmap04972
Vasopressin-regulated water reabsorptionmap04962
Endocrine and other factor-regulated calcium reabsorptionmap04961

Gene Ontology

GO term OntologyName
GO:0005525molecular_functionGTP binding
GO:0003924molecular_functionGTPase activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf41.408
SRR3591706second leaf51.872
SRR3591707mature leaf33.752
SRR3591708Shoot apex47.763
SRR3591709Stem32.808
SRR3591710White floral bud22.843
SRR3591711White flower26.086
SRR3591712Green floral bud38.153
SRR3591713Yellow flower19.597
SRP173429 SRR8316895Juvenile bud stage 34.439
SRR8316896Juvenile bud stage 43.346
SRR8316897Juvenile bud stage 21.850
SRR8316894Third green stage 15.985
SRR8316900Third green stage 47.888
SRR8316901Third green stage 41.645
SRR8316898Complete white stage 15.215
SRR8316899Complete white stage 62.349
SRR8316903Complete white stage 21.021
SRR8316902Silver flowering stage7.967
SRR8316904Silver flowering stage10.003
SRR8316905Silver flowering stage4.084
SRR8316906Gold flowering stage 16.384
SRR8316907Gold flowering stage 16.620
SRR8316908Gold flowering stage 20.563
SRP132670SRR6706286Control59.191
SRR6706287Light intensity 50%54.219
SRR6706288Light intensity 20%58.945
CNP0000432CNS0095592Slightly white alabastrum(diploid) 158.471
CNS0095593Slightly white alabastrum(diploid) 277.323
CNS0095594Slightly white alabastrum(diploid) 359.397
CNS0095595Whole white alabastrum(diploid) 244.502
CNS0095596Whole white alabastrum(diploid) 343.160
CNS0095597Whole white alabastrum(diploid) 445.728
CNS0095598Silvery flower (diploied) 142.706
CNS0095599Silvery flower (diploied) 234.068
CNS0095600Silvery flower (diploied) 327.966
CNS0095601Golden flower (diploid) 142.149
CNS0095602Golden flower (diploid) 228.877
CNS0095603Golden flower (diploid) 327.350
CNS0095604Slightly white alabastrum(tetraploid) 148.377
CNS0095605Slightly white alabastrum(tetraploid) 251.624
CNS0095606Slightly white alabastrum(tetraploid) 384.213
CNS0095607Whole white alabastrum(tetraploid) 134.548
CNS0095608Whole white alabastrum(tetraploid) 225.968
CNS0095609Whole white alabastrum(tetraploid) 355.676
CNS0095610Silvery flower (tetraploid) 125.039
CNS0095611Silvery flower (tetraploid) 225.996
CNS0095612Silvery flower (tetraploid) 321.704
CNS0095613Golden flower (tetraploid) 118.912
CNS0095614Golden flower (tetraploid) 221.402
CNS0095615Golden flower (tetraploid) 38.673
CRA001975CRR073297Stem 154.333
CRR073298Stem 250.003
CRR073299Stem 375.597
CRR073300Leaf 156.567
CRR073301Leaf 258.559
CRR073302Leaf 363.721
CRR073303Juvenile bud 159.959
CRR073304Juvenile bud 250.849
CRR073305Juvenile bud 362.613
CRR073306Third green 115.736
CRR073307Third green 219.275
CRR073308Third green 315.980
CRR073309Second white 19.343
CRR073310Second white 211.271
CRR073311Second white 37.175
CRR073312Silver flowering 19.179
CRR073313Silver flowering 28.575
CRR073314Silver flowering 35.612
CRR073315Gold flowering 141.680
CRR073316Gold flowering 245.614
CRR073317Gold flowering 338.459
CRR073318Tawny withering 179.552
CRR073319Tawny withering 278.183
CRR073320Tawny withering 385.878