Gene detail

Detail information of GWHGAAZE007695

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP01760.1	3.4447E-136	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q9M060\|IF62_ARATH	8E-134	Eukaryotic translation initiation factor 6-2 {ECO:0000255\|HAMAP-Rule:MF_03132}
trEMBL	tr\|A0A068TZR3\|A0A068TZR3_COFCA	1E-136	Eukaryotic translation initiation factor 6 {ECO:0000256\|HAMAP-Rule:MF_03132}
TAIR10	AT3G55620.1	4E-106	Translation initiation factor IF6

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	50423920	50430551	-
GWHAAZE00000002	mRNA	50423920	50430551	-
GWHAAZE00000002	exon	50430494	50430551	-
GWHAAZE00000002	exon	50427557	50427653	-
GWHAAZE00000002	exon	50427376	50427461	-
GWHAAZE00000002	exon	50427235	50427279	-
GWHAAZE00000002	exon	50425527	50425657	-
GWHAAZE00000002	exon	50423920	50424177	-
GWHAAZE00000002	CDS	50430494	50430551	-
GWHAAZE00000002	CDS	50427557	50427653	-
GWHAAZE00000002	CDS	50427376	50427461	-
GWHAAZE00000002	CDS	50427235	50427279	-
GWHAAZE00000002	CDS	50425527	50425657	-
GWHAAZE00000002	CDS	50423920	50424177	-

Transcript Sequence
>GWHTAAZE007703 ATGTATGTCGTACTGGGTATTAAGGAGAGCATCGTGTCTTTTGATGGTTTGGATGAGGGATTGCAGTTTGAGAATTCATGTGAGATTGGGGTATTCTCAAAGCTGACCAATGCCTACTGTTTGGTTGCAATTGGAGGTTCTGAGAACTTTTACAGCATGTTCGAGTCTGAGTTAGCAGATGTTATCCCTGTTGTTAAAACCTCCATTGGCGGCACAAGAATAATCGGGAGACTTTGTGCTGGAAACAAAAATGGGCTTCTCTTGCCGCACACCACCACCGACCAAGAACTTCAGCATTTGAGGAACAGTTTGCCCGATCAAGTTGTTGTTCAGCGAATTGATGAGAGATTATCTGCTCTTGGAAATTGCATAGCATGCAATGACCACGTTGCTCTTACCCATACTGATCTTGACCGTGTGCATCCCCACACATCCATAGAGGATTTGGATGAACTTTCAACCCTCCTTCAGGTCCCACTGGTGGCTGGGACCGTGAACCGAGGCAGTGAAGTGATAGCTGCCGGATTGACCGTCAATGACTGGACTGCCTTCTGTGGGTCTGACACTACAGCCACCGAATTGTCTGTCATAGAGAACGTCTTCAAGTTGAGAGAAGCCCAGCCTAGTGCCATTGTCGATGAGATGAGGAAATCGTTGATCGATAGCTATGTCTGA

Network for GWHGAAZE007695

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01912.19	eIF-6	21	139	3.50E-42
PF01912.19	eIF-6	140	182	7.00E-12

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K03264	EIF6	Ribosome biogenesis in eukaryotes	map03008

Gene Ontology

GO term	Ontology	Name
GO:0042256	biological_process	mature ribosome assembly
GO:0043022	molecular_function	ribosome binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	39.456
	SRR3591706	second leaf	15.751
	SRR3591707	mature leaf	25.638
	SRR3591708	Shoot apex	22.664
	SRR3591709	Stem	43.194
	SRR3591710	White floral bud	31.329
	SRR3591711	White flower	46.715
	SRR3591712	Green floral bud	32.501
	SRR3591713	Yellow flower	48.138
SRP173429	SRR8316895	Juvenile bud stage	15.999
	SRR8316896	Juvenile bud stage	31.273
	SRR8316897	Juvenile bud stage	10.528
	SRR8316894	Third green stage	10.470
	SRR8316900	Third green stage	31.717
	SRR8316901	Third green stage	33.273
	SRR8316898	Complete white stage	12.160
	SRR8316899	Complete white stage	28.618
	SRR8316903	Complete white stage	18.951
	SRR8316902	Silver flowering stage	14.422
	SRR8316904	Silver flowering stage	16.018
	SRR8316905	Silver flowering stage	8.957
	SRR8316906	Gold flowering stage	31.128
	SRR8316907	Gold flowering stage	29.941
	SRR8316908	Gold flowering stage	29.774
SRP132670	SRR6706286	Control	28.757
	SRR6706287	Light intensity 50%	26.235
	SRR6706288	Light intensity 20%	30.304
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	33.726
	CNS0095593	Slightly white alabastrum(diploid) 2	33.470
	CNS0095594	Slightly white alabastrum(diploid) 3	31.773
	CNS0095595	Whole white alabastrum(diploid) 2	27.194
	CNS0095596	Whole white alabastrum(diploid) 3	29.132
	CNS0095597	Whole white alabastrum(diploid) 4	29.657
	CNS0095598	Silvery flower (diploied) 1	39.001
	CNS0095599	Silvery flower (diploied) 2	33.566
	CNS0095600	Silvery flower (diploied) 3	35.380
	CNS0095601	Golden flower (diploid) 1	28.095
	CNS0095602	Golden flower (diploid) 2	33.329
	CNS0095603	Golden flower (diploid) 3	30.229
	CNS0095604	Slightly white alabastrum(tetraploid) 1	31.809
	CNS0095605	Slightly white alabastrum(tetraploid) 2	32.680
	CNS0095606	Slightly white alabastrum(tetraploid) 3	31.788
	CNS0095607	Whole white alabastrum(tetraploid) 1	23.767
	CNS0095608	Whole white alabastrum(tetraploid) 2	27.646
	CNS0095609	Whole white alabastrum(tetraploid) 3	25.986
	CNS0095610	Silvery flower (tetraploid) 1	47.473
	CNS0095611	Silvery flower (tetraploid) 2	46.652
	CNS0095612	Silvery flower (tetraploid) 3	45.180
	CNS0095613	Golden flower (tetraploid) 1	41.784
	CNS0095614	Golden flower (tetraploid) 2	44.191
	CNS0095615	Golden flower (tetraploid) 3	42.591
CRA001975	CRR073297	Stem 1	25.122
	CRR073298	Stem 2	23.080
	CRR073299	Stem 3	23.311
	CRR073300	Leaf 1	27.030
	CRR073301	Leaf 2	30.230
	CRR073302	Leaf 3	32.710
	CRR073303	Juvenile bud 1	35.804
	CRR073304	Juvenile bud 2	23.597
	CRR073305	Juvenile bud 3	29.825
	CRR073306	Third green 1	22.482
	CRR073307	Third green 2	31.384
	CRR073308	Third green 3	25.024
	CRR073309	Second white 1	24.223
	CRR073310	Second white 2	25.075
	CRR073311	Second white 3	17.996
	CRR073312	Silver flowering 1	13.582
	CRR073313	Silver flowering 2	17.738
	CRR073314	Silver flowering 3	13.769
	CRR073315	Gold flowering 1	40.230
	CRR073316	Gold flowering 2	35.649
	CRR073317	Gold flowering 3	25.435
	CRR073318	Tawny withering 1	31.782
	CRR073319	Tawny withering 2	43.189
	CRR073320	Tawny withering 3	34.508