Detail information of GWHGAAZE007611


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002278547.22.63855E-77PREDICTED: F-box protein SKIP23-like [Vitis vinifera]
Swissprottr|Q3EBZ2|SKI23_ARATH7E-45F-box protein SKIP23
trEMBLtr|F6HU16|F6HU16_VITVI1E-77Putative uncharacterized protein {ECO:0000313|EMBL:CCB58178.1}
TAIR10AT2G17030.11E-26F-box family protein with a domain of unknown function (DUF295)

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene4885734348859039+
GWHAAZE00000002mRNA4885734348859039+
GWHAAZE00000002exon4885734348857772+
GWHAAZE00000002exon4885839948859039+
GWHAAZE00000002CDS4885734348857772+
GWHAAZE00000002CDS4885839948859039+
Transcript Sequence

Network for GWHGAAZE007611

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03478.19DUF2952653206.30E-13
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyF-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf78.291
SRR3591706second leaf9.471
SRR3591707mature leaf4.315
SRR3591708Shoot apex105.957
SRR3591709Stem52.923
SRR3591710White floral bud13.177
SRR3591711White flower20.414
SRR3591712Green floral bud9.167
SRR3591713Yellow flower5.737
SRP173429 SRR8316895Juvenile bud stage 17.736
SRR8316896Juvenile bud stage 21.057
SRR8316897Juvenile bud stage 7.592
SRR8316894Third green stage 6.205
SRR8316900Third green stage 11.729
SRR8316901Third green stage 6.591
SRR8316898Complete white stage 0.386
SRR8316899Complete white stage 12.432
SRR8316903Complete white stage 5.812
SRR8316902Silver flowering stage0.394
SRR8316904Silver flowering stage0.513
SRR8316905Silver flowering stage0.050
SRR8316906Gold flowering stage 1.130
SRR8316907Gold flowering stage 0.946
SRR8316908Gold flowering stage 1.124
SRP132670SRR6706286Control8.851
SRR6706287Light intensity 50%6.879
SRR6706288Light intensity 20%6.715
CNP0000432CNS0095592Slightly white alabastrum(diploid) 19.116
CNS0095593Slightly white alabastrum(diploid) 28.981
CNS0095594Slightly white alabastrum(diploid) 38.475
CNS0095595Whole white alabastrum(diploid) 25.016
CNS0095596Whole white alabastrum(diploid) 33.974
CNS0095597Whole white alabastrum(diploid) 43.191
CNS0095598Silvery flower (diploied) 147.858
CNS0095599Silvery flower (diploied) 221.443
CNS0095600Silvery flower (diploied) 39.206
CNS0095601Golden flower (diploid) 139.389
CNS0095602Golden flower (diploid) 226.592
CNS0095603Golden flower (diploid) 326.469
CNS0095604Slightly white alabastrum(tetraploid) 16.356
CNS0095605Slightly white alabastrum(tetraploid) 25.199
CNS0095606Slightly white alabastrum(tetraploid) 314.188
CNS0095607Whole white alabastrum(tetraploid) 13.713
CNS0095608Whole white alabastrum(tetraploid) 21.524
CNS0095609Whole white alabastrum(tetraploid) 37.119
CNS0095610Silvery flower (tetraploid) 13.988
CNS0095611Silvery flower (tetraploid) 216.298
CNS0095612Silvery flower (tetraploid) 31.703
CNS0095613Golden flower (tetraploid) 12.571
CNS0095614Golden flower (tetraploid) 25.008
CNS0095615Golden flower (tetraploid) 31.176
CRA001975CRR073297Stem 145.569
CRR073298Stem 236.275
CRR073299Stem 354.680
CRR073300Leaf 113.102
CRR073301Leaf 212.266
CRR073302Leaf 311.211
CRR073303Juvenile bud 110.541
CRR073304Juvenile bud 23.466
CRR073305Juvenile bud 318.570
CRR073306Third green 10.083
CRR073307Third green 20.061
CRR073308Third green 30.388
CRR073309Second white 10.026
CRR073310Second white 20.199
CRR073311Second white 30.132
CRR073312Silver flowering 10.126
CRR073313Silver flowering 20.154
CRR073314Silver flowering 30.229
CRR073315Gold flowering 12.902
CRR073316Gold flowering 24.771
CRR073317Gold flowering 36.398
CRR073318Tawny withering 120.974
CRR073319Tawny withering 28.126
CRR073320Tawny withering 319.062