Detail information of GWHGAAZE007577


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_008242096.10PREDICTED: cell cycle checkpoint protein RAD17 [Prunus mume]
Swissprottr|Q9MBA3|RAD17_ARATH0Cell cycle checkpoint protein RAD17
trEMBLtr|D7SNW0|D7SNW0_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CBI17339.3}
TAIR10AT5G66130.12E-154RADIATION SENSITIVE 17

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene4804018148051686-
GWHAAZE00000002mRNA4804018148051686-
GWHAAZE00000002exon4805147148051686-
GWHAAZE00000002exon4804968748049744-
GWHAAZE00000002exon4804913648049218-
GWHAAZE00000002exon4804900948049056-
GWHAAZE00000002exon4804782748047883-
GWHAAZE00000002exon4804750548047607-
GWHAAZE00000002exon4804468948044999-
GWHAAZE00000002exon4804429348044608-
GWHAAZE00000002exon4804350648043631-
GWHAAZE00000002exon4804185048042048-
GWHAAZE00000002exon4804171448041774-
GWHAAZE00000002exon4804018148040390-
GWHAAZE00000002CDS4805147148051686-
GWHAAZE00000002CDS4804968748049744-
GWHAAZE00000002CDS4804913648049218-
GWHAAZE00000002CDS4804900948049056-
GWHAAZE00000002CDS4804782748047883-
GWHAAZE00000002CDS4804750548047607-
GWHAAZE00000002CDS4804468948044999-
GWHAAZE00000002CDS4804429348044608-
GWHAAZE00000002CDS4804350648043631-
GWHAAZE00000002CDS4804185048042048-
GWHAAZE00000002CDS4804171448041774-
GWHAAZE00000002CDS4804018148040390-
Transcript Sequence

Network for GWHGAAZE007577

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03215.16Rad17962681.20E-22
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K06662HRAD17, RAD24 Cell cycle - yeast map04111
Meiosis - yeastmap04113

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf3.930
SRR3591706second leaf3.192
SRR3591707mature leaf2.734
SRR3591708Shoot apex6.124
SRR3591709Stem6.031
SRR3591710White floral bud3.725
SRR3591711White flower4.928
SRR3591712Green floral bud4.003
SRR3591713Yellow flower3.416
SRP173429 SRR8316895Juvenile bud stage 3.775
SRR8316896Juvenile bud stage 4.821
SRR8316897Juvenile bud stage 2.358
SRR8316894Third green stage 2.688
SRR8316900Third green stage 4.131
SRR8316901Third green stage 3.414
SRR8316898Complete white stage 1.512
SRR8316899Complete white stage 6.071
SRR8316903Complete white stage 2.654
SRR8316902Silver flowering stage1.462
SRR8316904Silver flowering stage3.190
SRR8316905Silver flowering stage1.295
SRR8316906Gold flowering stage 3.281
SRR8316907Gold flowering stage 2.948
SRR8316908Gold flowering stage 4.521
SRP132670SRR6706286Control1.975
SRR6706287Light intensity 50%2.631
SRR6706288Light intensity 20%2.377
CNP0000432CNS0095592Slightly white alabastrum(diploid) 13.247
CNS0095593Slightly white alabastrum(diploid) 24.945
CNS0095594Slightly white alabastrum(diploid) 34.053
CNS0095595Whole white alabastrum(diploid) 22.972
CNS0095596Whole white alabastrum(diploid) 32.825
CNS0095597Whole white alabastrum(diploid) 42.456
CNS0095598Silvery flower (diploied) 13.485
CNS0095599Silvery flower (diploied) 23.280
CNS0095600Silvery flower (diploied) 33.684
CNS0095601Golden flower (diploid) 12.181
CNS0095602Golden flower (diploid) 22.015
CNS0095603Golden flower (diploid) 32.340
CNS0095604Slightly white alabastrum(tetraploid) 13.888
CNS0095605Slightly white alabastrum(tetraploid) 23.507
CNS0095606Slightly white alabastrum(tetraploid) 34.698
CNS0095607Whole white alabastrum(tetraploid) 12.382
CNS0095608Whole white alabastrum(tetraploid) 22.079
CNS0095609Whole white alabastrum(tetraploid) 34.749
CNS0095610Silvery flower (tetraploid) 13.238
CNS0095611Silvery flower (tetraploid) 23.800
CNS0095612Silvery flower (tetraploid) 32.771
CNS0095613Golden flower (tetraploid) 11.214
CNS0095614Golden flower (tetraploid) 22.109
CNS0095615Golden flower (tetraploid) 31.146
CRA001975CRR073297Stem 13.909
CRR073298Stem 23.202
CRR073299Stem 32.697
CRR073300Leaf 13.352
CRR073301Leaf 23.157
CRR073302Leaf 31.408
CRR073303Juvenile bud 11.402
CRR073304Juvenile bud 21.911
CRR073305Juvenile bud 31.760
CRR073306Third green 10.371
CRR073307Third green 20.212
CRR073308Third green 30.263
CRR073309Second white 10.444
CRR073310Second white 20.274
CRR073311Second white 30.279
CRR073312Silver flowering 10.165
CRR073313Silver flowering 20.390
CRR073314Silver flowering 30.110
CRR073315Gold flowering 11.895
CRR073316Gold flowering 22.403
CRR073317Gold flowering 31.730
CRR073318Tawny withering 12.378
CRR073319Tawny withering 22.626
CRR073320Tawny withering 33.710