Gene detail

Detail information of GWHGAAZE007546

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010649057.1	0	PREDICTED: NAC domain-containing protein 7 isoform X2 [Vitis vinifera]
Swissprot	tr\|Q9FWX2\|NAC7_ARATH	3E-105	NAC domain-containing protein 7
trEMBL	tr\|F6GWP2\|F6GWP2_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB44377.1}
TAIR10	AT4G36160.1	1E-110	NAC domain containing protein 76

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	47341789	47345495	+
GWHAAZE00000002	mRNA	47341789	47345495	+
GWHAAZE00000002	exon	47341789	47341817	+
GWHAAZE00000002	exon	47342326	47342508	+
GWHAAZE00000002	exon	47342853	47343124	+
GWHAAZE00000002	exon	47344905	47345495	+
GWHAAZE00000002	five_prime_UTR	47341789	47341817	+
GWHAAZE00000002	five_prime_UTR	47342326	47342354	+
GWHAAZE00000002	CDS	47342355	47342508	+
GWHAAZE00000002	CDS	47342853	47343124	+
GWHAAZE00000002	CDS	47344905	47345495	+

Transcript Sequence
>GWHTAAZE007554 TCAAACCCTGGCCTTCCACAACACAACAGAAACAACAGTACTCGCTGTGACGGATACAATGGAATCATGCGTCCCACCCGGATTTAGGTTCCATCCAACGGACGAGGAGCTAGTAGGGTACTACCTGAGGAAGAAGATCGCGTCACAAAAGATCGATCTTGATGTTATTCGAGATATTGATCTTTACAGAATCGAACCATGGGATCTCATAGAGAGGTGTAGAATTGGATACGAGGAGCAAAACGAGTGGTATTTTTTCAGTCACAAGGATAAGAAGTATCCGACAGGGACAAGAACTAATAGGGCGACCATGGCGGGGTTTTGGAAGGCTACTGGGAGAGACAAGGCGGTGTATGATAAGATGAAGTTGATTGGAATGAGGAAAACCCTAGTTTTCTATCGAGGTAGGGCACCAAACGGTCAGAAAACTGATTGGATCATGCATGAATATAGGCTCGAATCGGACGACAATGGTCCTCCGCAGGAAGAAGGATGGGTGGTATGTCGAGCATTCAAGAAGCGAATAACGGCCCAAACAAAGAGCACAGAGGGTTGGGATTCGACCTCTTTTTATGATGAATCAAGTAGCATTAGCTCGGTGGTCGAACCACTGGATTACATTACAAGAAATCGGCCAAACTACTTATCCCAAAGTGTCATTTGCAAGCAAGAATTCGAAGGCGATTTTATTAATCCGAATTTTATTCACTCGGATCAGCAATTCGTACAACTTCCACAACTAGAGAGCCCATCACTTCCTTTAAGTACAAAGAGGCCAATTAGCTCAAATAAAATCGTGCCTGAAAATAATGAGGAAGAAGAGAATATTAGAAGGTACAATAATGTTAATGCACCAAAAACAGTGACTGATTGGAGGGCACTTGACAAATTTGTGGCTTCTCAATTGAGCCAAGATGAAGGAGATGTTAATGGAGTTTCAAGCTTTGGAGCACATTATGATGATGATATGGAGGCATTATTGTTCTTGGAGGGTGGTGGGGAAGAAGGGGGGAAATTAGGGTTTTTGAGTTCAAGTTCAGATTGTGATATTGGGATTTGCATATTTGATAAATGA

Network for GWHGAAZE007546

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02365.16	NAM	6	133	1.60E-37

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	NAC

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.388
	SRR3591706	second leaf	1.094
	SRR3591707	mature leaf	0.885
	SRR3591708	Shoot apex	2.175
	SRR3591709	Stem	6.579
	SRR3591710	White floral bud	0.062
	SRR3591711	White flower	0.734
	SRR3591712	Green floral bud	0.725
	SRR3591713	Yellow flower	0.142
SRP173429	SRR8316895	Juvenile bud stage	0.398
	SRR8316896	Juvenile bud stage	1.494
	SRR8316897	Juvenile bud stage	0.435
	SRR8316894	Third green stage	0.225
	SRR8316900	Third green stage	0.291
	SRR8316901	Third green stage	0.652
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.452
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.061
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.038
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.199
SRP132670	SRR6706286	Control	0.276
	SRR6706287	Light intensity 50%	0.234
	SRR6706288	Light intensity 20%	0.086
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.568
	CNS0095593	Slightly white alabastrum(diploid) 2	0.765
	CNS0095594	Slightly white alabastrum(diploid) 3	1.249
	CNS0095595	Whole white alabastrum(diploid) 2	0.417
	CNS0095596	Whole white alabastrum(diploid) 3	0.002
	CNS0095597	Whole white alabastrum(diploid) 4	0.084
	CNS0095598	Silvery flower (diploied) 1	0.424
	CNS0095599	Silvery flower (diploied) 2	0.253
	CNS0095600	Silvery flower (diploied) 3	0.163
	CNS0095601	Golden flower (diploid) 1	0.328
	CNS0095602	Golden flower (diploid) 2	0.320
	CNS0095603	Golden flower (diploid) 3	0.193
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.616
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.246
	CNS0095606	Slightly white alabastrum(tetraploid) 3	3.365
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.041
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.635
	CNS0095610	Silvery flower (tetraploid) 1	0.050
	CNS0095611	Silvery flower (tetraploid) 2	0.206
	CNS0095612	Silvery flower (tetraploid) 3	0.352
	CNS0095613	Golden flower (tetraploid) 1	0.128
	CNS0095614	Golden flower (tetraploid) 2	0.574
	CNS0095615	Golden flower (tetraploid) 3	0.097
CRA001975	CRR073297	Stem 1	1.045
	CRR073298	Stem 2	1.559
	CRR073299	Stem 3	1.735
	CRR073300	Leaf 1	0.323
	CRR073301	Leaf 2	0.542
	CRR073302	Leaf 3	0.692
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.255
	CRR073306	Third green 1	0.055
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.005
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.212
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	1.251
	CRR073316	Gold flowering 2	0.350
	CRR073317	Gold flowering 3	0.074
	CRR073318	Tawny withering 1	2.180
	CRR073319	Tawny withering 2	0.557
	CRR073320	Tawny withering 3	1.904