Detail information of GWHGAAZE007444


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009340734.11.4678E-128PREDICTED: anaphase-promoting complex subunit 10 [Pyrus x bretschneideri]
Swissprottr|Q9ZPW2|APC10_ARATH3E-120Anaphase-promoting complex subunit 10
trEMBLtr|M1B964|M1B964_SOLTU6E-127Anaphase-promoting complex subunit 10 {ECO:0000256|PIRNR:PIRNR028841}
TAIR10AT2G18290.14E-82anaphase promoting complex 10

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene4538915445392822-
GWHAAZE00000002mRNA4538915445392822-
GWHAAZE00000002exon4538915445389223-
GWHAAZE00000002exon4538931745389421-
GWHAAZE00000002exon4539169745391767-
GWHAAZE00000002exon4539209545392187-
GWHAAZE00000002exon4539227345392333-
GWHAAZE00000002exon4539264445392822-
GWHAAZE00000002CDS4539264445392822-
GWHAAZE00000002CDS4539227345392333-
GWHAAZE00000002CDS4539209545392187-
GWHAAZE00000002CDS4539169745391767-
GWHAAZE00000002CDS4538931745389421-
GWHAAZE00000002CDS4538915445389223-
Transcript Sequence

Network for GWHGAAZE007444

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03256.17ANAPC1091898.90E-77
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K03357APC10, DOC1 Ubiquitin mediated proteolysis map04120
Cell cyclemap04110
Cell cycle - yeastmap04111
Meiosis - yeastmap04113
Oocyte meiosismap04114
Progesterone-mediated oocyte maturationmap04914

Gene Ontology

GO term OntologyName
GO:0031145biological_processanaphase-promoting complex-dependent catabolic process
GO:0005680cellular_componentanaphase-promoting complex

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf20.939
SRR3591706second leaf17.023
SRR3591707mature leaf12.615
SRR3591708Shoot apex27.545
SRR3591709Stem18.823
SRR3591710White floral bud12.560
SRR3591711White flower13.415
SRR3591712Green floral bud15.425
SRR3591713Yellow flower17.844
SRP173429 SRR8316895Juvenile bud stage 18.043
SRR8316896Juvenile bud stage 19.687
SRR8316897Juvenile bud stage 13.431
SRR8316894Third green stage 11.290
SRR8316900Third green stage 32.335
SRR8316901Third green stage 29.239
SRR8316898Complete white stage 12.603
SRR8316899Complete white stage 32.613
SRR8316903Complete white stage 15.291
SRR8316902Silver flowering stage11.718
SRR8316904Silver flowering stage14.560
SRR8316905Silver flowering stage7.486
SRR8316906Gold flowering stage 18.290
SRR8316907Gold flowering stage 21.630
SRR8316908Gold flowering stage 18.884
SRP132670SRR6706286Control14.552
SRR6706287Light intensity 50%16.023
SRR6706288Light intensity 20%17.837
CNP0000432CNS0095592Slightly white alabastrum(diploid) 123.971
CNS0095593Slightly white alabastrum(diploid) 228.659
CNS0095594Slightly white alabastrum(diploid) 322.063
CNS0095595Whole white alabastrum(diploid) 217.343
CNS0095596Whole white alabastrum(diploid) 322.944
CNS0095597Whole white alabastrum(diploid) 421.171
CNS0095598Silvery flower (diploied) 120.397
CNS0095599Silvery flower (diploied) 229.542
CNS0095600Silvery flower (diploied) 327.108
CNS0095601Golden flower (diploid) 123.819
CNS0095602Golden flower (diploid) 222.019
CNS0095603Golden flower (diploid) 319.767
CNS0095604Slightly white alabastrum(tetraploid) 117.349
CNS0095605Slightly white alabastrum(tetraploid) 217.436
CNS0095606Slightly white alabastrum(tetraploid) 329.484
CNS0095607Whole white alabastrum(tetraploid) 111.282
CNS0095608Whole white alabastrum(tetraploid) 211.846
CNS0095609Whole white alabastrum(tetraploid) 317.457
CNS0095610Silvery flower (tetraploid) 117.929
CNS0095611Silvery flower (tetraploid) 218.848
CNS0095612Silvery flower (tetraploid) 312.219
CNS0095613Golden flower (tetraploid) 112.844
CNS0095614Golden flower (tetraploid) 216.517
CNS0095615Golden flower (tetraploid) 38.095
CRA001975CRR073297Stem 115.213
CRR073298Stem 218.842
CRR073299Stem 324.312
CRR073300Leaf 116.728
CRR073301Leaf 213.879
CRR073302Leaf 320.834
CRR073303Juvenile bud 117.984
CRR073304Juvenile bud 212.118
CRR073305Juvenile bud 319.614
CRR073306Third green 15.551
CRR073307Third green 29.825
CRR073308Third green 37.052
CRR073309Second white 18.259
CRR073310Second white 210.128
CRR073311Second white 36.814
CRR073312Silver flowering 17.015
CRR073313Silver flowering 25.512
CRR073314Silver flowering 35.195
CRR073315Gold flowering 113.516
CRR073316Gold flowering 216.625
CRR073317Gold flowering 311.948
CRR073318Tawny withering 118.990
CRR073319Tawny withering 217.657
CRR073320Tawny withering 330.273