Detail information of GWHGAAZE007407


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrAIK21792.10geranylgeranyl diphosphate synthase [Panax notoginseng]
Swissprottr|Q42698|GGPPS_CATRO0Geranylgeranyl pyrophosphate synthase, chloroplastic (Precursor)
trEMBLtr|A0A076VAL2|A0A076VAL2_9APIA0Geranylgeranyl diphosphate synthase {ECO:0000313|EMBL:AIK21792.1}
TAIR10AT4G36810.15E-130geranylgeranyl pyrophosphate synthase 1

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene4473793144739157-
GWHAAZE00000002mRNA4473793144739157-
GWHAAZE00000002exon4473793144738512-
GWHAAZE00000002exon4473887344739157-
GWHAAZE00000002CDS4473887344739157-
GWHAAZE00000002CDS4473793144738512-
Transcript Sequence

Network for GWHGAAZE007407

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00348.18polyprenyl_synt242581.50E-55
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K13789GGPS Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Terpenoid backbone biosynthesismap00900

Gene Ontology

GO term OntologyName
GO:0008299biological_processisoprenoid biosynthetic process

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf85.879
SRR3591706second leaf243.424
SRR3591707mature leaf120.755
SRR3591708Shoot apex141.322
SRR3591709Stem38.622
SRR3591710White floral bud468.654
SRR3591711White flower271.740
SRR3591712Green floral bud416.235
SRR3591713Yellow flower614.440
SRP173429 SRR8316895Juvenile bud stage 155.867
SRR8316896Juvenile bud stage 140.042
SRR8316897Juvenile bud stage 98.420
SRR8316894Third green stage 80.524
SRR8316900Third green stage 527.762
SRR8316901Third green stage 481.235
SRR8316898Complete white stage 231.652
SRR8316899Complete white stage 633.414
SRR8316903Complete white stage 386.650
SRR8316902Silver flowering stage119.456
SRR8316904Silver flowering stage161.635
SRR8316905Silver flowering stage87.393
SRR8316906Gold flowering stage 188.562
SRR8316907Gold flowering stage 173.486
SRR8316908Gold flowering stage 174.928
SRP132670SRR6706286Control542.639
SRR6706287Light intensity 50%595.477
SRR6706288Light intensity 20%636.940
CNP0000432CNS0095592Slightly white alabastrum(diploid) 1225.860
CNS0095593Slightly white alabastrum(diploid) 2235.033
CNS0095594Slightly white alabastrum(diploid) 3202.915
CNS0095595Whole white alabastrum(diploid) 2314.261
CNS0095596Whole white alabastrum(diploid) 3267.511
CNS0095597Whole white alabastrum(diploid) 4290.405
CNS0095598Silvery flower (diploied) 1105.952
CNS0095599Silvery flower (diploied) 2121.934
CNS0095600Silvery flower (diploied) 3266.670
CNS0095601Golden flower (diploid) 1110.968
CNS0095602Golden flower (diploid) 2231.930
CNS0095603Golden flower (diploid) 3223.461
CNS0095604Slightly white alabastrum(tetraploid) 1284.446
CNS0095605Slightly white alabastrum(tetraploid) 2269.518
CNS0095606Slightly white alabastrum(tetraploid) 3577.608
CNS0095607Whole white alabastrum(tetraploid) 1188.029
CNS0095608Whole white alabastrum(tetraploid) 2208.695
CNS0095609Whole white alabastrum(tetraploid) 3583.504
CNS0095610Silvery flower (tetraploid) 1327.818
CNS0095611Silvery flower (tetraploid) 2317.293
CNS0095612Silvery flower (tetraploid) 3264.706
CNS0095613Golden flower (tetraploid) 1306.539
CNS0095614Golden flower (tetraploid) 2323.705
CNS0095615Golden flower (tetraploid) 3225.898
CRA001975CRR073297Stem 1243.658
CRR073298Stem 2262.674
CRR073299Stem 3266.864
CRR073300Leaf 1680.168
CRR073301Leaf 2563.320
CRR073302Leaf 3727.471
CRR073303Juvenile bud 1872.381
CRR073304Juvenile bud 21324.243
CRR073305Juvenile bud 3707.779
CRR073306Third green 1529.494
CRR073307Third green 2288.637
CRR073308Third green 3359.551
CRR073309Second white 1187.451
CRR073310Second white 2131.691
CRR073311Second white 3108.205
CRR073312Silver flowering 1111.033
CRR073313Silver flowering 2141.191
CRR073314Silver flowering 3107.529
CRR073315Gold flowering 1195.629
CRR073316Gold flowering 2238.161
CRR073317Gold flowering 3238.904
CRR073318Tawny withering 1205.411
CRR073319Tawny withering 2254.199
CRR073320Tawny withering 3418.010