Gene detail

Detail information of GWHGAAZE007392

Functional Annotation

Database	Orthologs	Annotation
Nr	CDP02779.1	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q9XF43\|KCS6_ARATH	3-ketoacyl-CoA synthase 6
trEMBL	tr\|A0A068U3P4\|A0A068U3P4_COFCA	3-ketoacyl-CoA synthase {ECO:0000256\|PIRNR:PIRNR036417}
TAIR10	AT1G68530.1	3-ketoacyl-CoA synthase 6

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	44321376	44323736	-
GWHAAZE00000002	mRNA	44321376	44323736	-
GWHAAZE00000002	exon	44321376	44321903	-
GWHAAZE00000002	exon	44322774	44323736	-
GWHAAZE00000002	CDS	44322774	44323736	-
GWHAAZE00000002	CDS	44321376	44321903	-

Transcript Sequence
>GWHTAAZE007400 ATGGCACAAGTTTTACCAAATTCCTCCACCTCCGTAAAGCCCAACTACCCCAAACTATGCTACCAATACTTCATCAACAACTTTCTCGCGGTCATCCTCACACCCATAATTGCGACTATTGGTTTCAAGTTCTTCAAATCAGACCCACAACAAATCCTCAACACTCTCACCTCCCTCCAATTCACTTCCATCCAAATCCTCACCTCTTCTTTCTTGCTCATTACAATCACCACAGTCTACTTCATGTCGAAACCACGATCAATCTACCTAGTCGACTACGCTTGCTTCAAGCCTCCCATCGCTTGCAGAGTACCTTTTGCCACTTTCATGGAACACTCCAAACTAATCCTCAAAGACAATCCGAAGAGCGTCGATTTCCAAATCCGAATCCTTGAACGCTCCGGCCTAGGAGAAGAGACCTGTCTCCCTCCCGCGATTCACTGTATCCCTCCCAACCCAAGCATGGAAAACTCGAGAGCCGAAGCTGAGTTGGTTATATTTTCTAGCATTGATTCCTTGCTTGCAAAAACAGGCCTAAAGCCAAAAGACATTGATATTCTAATAGTGAATTGTAGTCTATTTTCACCAACTCCATCTTTATCAGCAATGGTGGTTAACAAGTACAAAATGAGGAGCAACATAAGGAGTTTTAACCTCTCTGGAATGGGATGTAGTGCGGGCCTAATCTCGATTGATTTAGCCCGAGACCTACTTCAAGTATATCCGAATTCAAACGCGCTCGTTGTCAGCACTGAAATCATCACACCCAATTACTATCAAGGCTCAGAAAGGGCTATGTTGCTCCCGAATTGCTTGTTTCGAATGGGAGGAGCAGCGGTGCTTTTATCAAACAAGGGTCGTGCCAAGAAACAATCAAAGTATAAATTGCTCCATGTAATTAGAACACACAAGGGTGCTGAAGATAGAGCCTACAAATGCGTATACGAAGAACAAGACCCACAGGGTAAAATCGGAATCAGCCTTTCGAAGGATCTAATGGTAATTGCAGGTGAAGCCCTAAAGTCAAACATCACGACAATCGGTCCACTAGTTTTACCAGCGTCAGAACAACTCCTCTTTCTCTTCAGCCTAATCGGCCGGAAAATCTTCAATCTTAAAATAAAACCCTATATCCCTGATTTTAAAATGGCCTTTGAGCATTTTTGCATACACGCGGGGGGTAGAGCAGTTATTGATGAATTGCAGAAGAATCTAGAGCTTTCGGCAGAACATGTGGAAGCTTCTAGAATGACTTTGCATAGATTCGGCAACACGTCGTCGTCTAGCCTGTGGTATGAATTGGCATATATAGAGGCCAAAGGGAGAATGAAAAAAGGAGATAGGGTTTGGCAAATAGCGTTTGGGAGCGGATTTAAGTGTAACAGTGCTGTTTGGATAAGTAATAAGTGTGTCCAAACACCTACTAATGGCCCTTGGGATGATTGTATTGATAGCTACCCAGTACACATCCCTGAGATTGTGAAGCTCTAA

Network for GWHGAAZE007392

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08392.13	FAE1_CUT1_RppA	80	368	3.10E-135
PF08541.11	ACP_syn_III_C	386	465	2.20E-12

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K15397	KCS	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Fatty acid elongation	map00062
		Plant-pathogen interaction	map04626

Gene Ontology

GO term	Ontology	Name
GO:0006633	biological_process	fatty acid biosynthetic process
GO:0016020	cellular_component	membrane
GO:0003824	molecular_function	catalytic activity
GO:0016747	molecular_function	transferase activity, transferring acyl groups other than amino-acyl groups

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	9.095
	SRR3591706	second leaf	18.363
	SRR3591707	mature leaf	12.863
	SRR3591708	Shoot apex	11.291
	SRR3591709	Stem	4.999
	SRR3591710	White floral bud	3.040
	SRR3591711	White flower	2.230
	SRR3591712	Green floral bud	12.920
	SRR3591713	Yellow flower	0.410
SRP173429	SRR8316895	Juvenile bud stage	15.080
	SRR8316896	Juvenile bud stage	23.797
	SRR8316897	Juvenile bud stage	8.151
	SRR8316894	Third green stage	19.469
	SRR8316900	Third green stage	51.144
	SRR8316901	Third green stage	41.460
	SRR8316898	Complete white stage	0.902
	SRR8316899	Complete white stage	10.615
	SRR8316903	Complete white stage	1.215
	SRR8316902	Silver flowering stage	1.094
	SRR8316904	Silver flowering stage	0.859
	SRR8316905	Silver flowering stage	0.046
	SRR8316906	Gold flowering stage	0.416
	SRR8316907	Gold flowering stage	0.235
	SRR8316908	Gold flowering stage	1.173
SRP132670	SRR6706286	Control	27.431
	SRR6706287	Light intensity 50%	30.513
	SRR6706288	Light intensity 20%	36.954
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	5.160
	CNS0095593	Slightly white alabastrum(diploid) 2	3.802
	CNS0095594	Slightly white alabastrum(diploid) 3	4.420
	CNS0095595	Whole white alabastrum(diploid) 2	4.781
	CNS0095596	Whole white alabastrum(diploid) 3	3.835
	CNS0095597	Whole white alabastrum(diploid) 4	2.456
	CNS0095598	Silvery flower (diploied) 1	8.189
	CNS0095599	Silvery flower (diploied) 2	3.410
	CNS0095600	Silvery flower (diploied) 3	1.057
	CNS0095601	Golden flower (diploid) 1	1.578
	CNS0095602	Golden flower (diploid) 2	0.933
	CNS0095603	Golden flower (diploid) 3	1.002
	CNS0095604	Slightly white alabastrum(tetraploid) 1	19.740
	CNS0095605	Slightly white alabastrum(tetraploid) 2	10.236
	CNS0095606	Slightly white alabastrum(tetraploid) 3	55.384
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.203
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.527
	CNS0095609	Whole white alabastrum(tetraploid) 3	25.464
	CNS0095610	Silvery flower (tetraploid) 1	0.344
	CNS0095611	Silvery flower (tetraploid) 2	0.540
	CNS0095612	Silvery flower (tetraploid) 3	0.434
	CNS0095613	Golden flower (tetraploid) 1	0.280
	CNS0095614	Golden flower (tetraploid) 2	0.489
	CNS0095615	Golden flower (tetraploid) 3	0.384
CRA001975	CRR073297	Stem 1	25.056
	CRR073298	Stem 2	24.444
	CRR073299	Stem 3	19.462
	CRR073300	Leaf 1	27.660
	CRR073301	Leaf 2	43.718
	CRR073302	Leaf 3	31.565
	CRR073303	Juvenile bud 1	8.354
	CRR073304	Juvenile bud 2	4.335
	CRR073305	Juvenile bud 3	18.680
	CRR073306	Third green 1	0.659
	CRR073307	Third green 2	0.243
	CRR073308	Third green 3	0.699
	CRR073309	Second white 1	0.275
	CRR073310	Second white 2	0.084
	CRR073311	Second white 3	0.171
	CRR073312	Silver flowering 1	0.647
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.629
	CRR073315	Gold flowering 1	7.359
	CRR073316	Gold flowering 2	11.913
	CRR073317	Gold flowering 3	13.841
	CRR073318	Tawny withering 1	27.451
	CRR073319	Tawny withering 2	6.479
	CRR073320	Tawny withering 3	39.584