Gene detail

Detail information of GWHGAAZE007309

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_009605676.1	PREDICTED: leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 [Nicotiana tomentosiformis]
Swissprot	tr\|O49545\|BAME1_ARATH	Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 (Precursor)
trEMBL	tr\|F8WS83\|F8WS83_SOLPE	Leucine rich repeat receptor protein kinase CLAVATA1 {ECO:0000313\|EMBL:BAK52390.1}
TAIR10	AT5G65700.2	Leucine-rich receptor-like protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	42594698	42598284	-
GWHAAZE00000002	mRNA	42594698	42598284	-
GWHAAZE00000002	exon	42594698	42595026	-
GWHAAZE00000002	exon	42595686	42598284	-
GWHAAZE00000002	CDS	42595686	42598284	-
GWHAAZE00000002	CDS	42594698	42595026	-

Transcript Sequence
>GWHTAAZE007317 ATGCGATTCGTTCTCTTTCTCCTTCTCTTACTTCACTCACACATTCACCACCTACTCGCCGCAAAACCACCGCACCTTCCGGAATACCGTGCACTTCTCTCCCTCAAAACCGCCCTTACAACAGATGACCCCCAATCCTCCCCCCTCTTCACCTGGAACACCTCCACCTCCCACTGCACGTGGTCCGGCGTCACGTGCGACTCCCACCGTCATGTCACCTCCCTCGACATCTCCTCTCTCAACCTCTCCGGCACACTCTCCTCCGACATCGGCCACCTCCAATACCTTCGCAACCTCACTGTCGCCGCCAATCAAATCTCCGGCCCTATACCACCCCAAATCTCCCTCATTCCCGGCCTTAAATTCCTCAACCTCTCTAATAACATATTTAATCAAACTTTTCCCTCACAGCTCTCTCGCATTATTAGCTTAGAAGTTCTCGACCTATACAACAACAACATGACCGGTGAGCTTCCGGTAGATGTCTACAAGATGACGAATCTCAAACACCTTCACCTCGGAGGTAATTTCTTCGCCGGCCGGATTCCGCTGGAGTATGGCCGGTTCAGTTTCCTCGAGTACCTTGCAGTTTCCGGTAACGAGCTTGACGGTCCTATACCACCGGAAATCGGTAACATTTCTTCTCTTCGTCACCTCTATATTGGCTATTACAACAACTATTCCGGCGGTATTCCACCGGAAATCGGAAACTTATCTCAGCTCATCCGTTTCGACGCGGCGAACTGCGGACTCTCCGGCGAGATACCGGTGGAGATCGGTAAGCTTCAGAATCTGGACACACTGTTTCTTCAAGTGAACGGACTTACCGGAACTTTAACTACAGAGCTTGGTAACTTGAAGAGCTTGAAGTCAATGGATCTCTCTAACAATATATTCTCTGGTGAAATACCGGCTTCATTCGCCGAGTTAAAGAACTTAACGCTGTTGAATCTCTTTCGGAACAAGCTTCACGGTTCGATTCCTGATTTTATCGGTGATTTGCCGGAGTTGGAGGTCTTGCAGCTGTGGGAGAATAATTTCACTGGAAGCATTCCGCAGAATTTGGGCTTGAATGGTAAGCTTCGGACTCTAGATCTGTCTTCGAACAAATTGACAGGAATGTTACCTCCTTATATGTGCTCTGGTAATAGACTTGAAACCCTAATTACTCTAGCAAACTTTTTGTTCGGTCCGATTCCGGAACCATTAGGCCAATGTAAATCATTGAGTCGAATTCGAATGGGGGAGAACTACCTAAATGGTTCCATTCCCAAGGGGCTATTAAGTTTGCCTCAGCTTACACAAGTAGAACTTCAAGATAATCTTCTCACCGGAGAATTTCCAGTGACAGATTCGATATCATCGAATCTCGGACAGATTAGTCTTTCCAATAATCGTCTCAGTGGATTATTACCGTCCACGATCGGTAACTTTTCCGGTTTACAGAAGCTTTTGCTCGATGGTAACAAGTTTTCCGGCCGAATTCCGGCCCAAATTGGACGGTTGCAGCAGCTATCTAAGATGGATTTCAGCCACAATAGTTTCTCTGGCGAGATTGCTCCGGAGATTAGCAAATGCAAGCTGCTGACATTTGTTGATCTTAGTAGGAACCAGCTTTCGGGCGTGATTCCGACTGAGATTACCGATATGCGGATACTGAATTACTTGAATTTGTCTAGAAATCATCTAGTAGGCAGTATTCCGGCTCCAATTGCTACAATGCAAAGCTTAACTTCTGTTGATTTTTCGTATAATAATCTATCTGGTTTAATTCCAGGGACCGGTCAGTTCAGTTACTTTAACTATACTTCTTTTGTCGGTAATCCGGAACTTTGTGGCCCTTATTTAGGGCCTTGCAAAGAAGGGATTGCCAGTGGCACTCACCAACCACATGTTAAAGGGCCACTCTCTGCTTCTTTGAAGCTTCTACTTGTGATTGGGTTGCTTGTGTGCTCGATTGTATTCGCCGTTGCTGCAATTATTAAGGCCCGGTCATTAAAGAAGGCGAGTGAGGCTCGTGCGTGGAAACTAACAGCTTTCCAGCGCTTGGATTTCACTTGTGATGATGTTCTTGATAGCTTGAAAGAGGACAACATTATAGGCAAAGGTGGTGCTGGCATTGTTTACAAAGGCGCAATGCCTAATGGTGAAAATGTTGCTGTGAAAAGGTTGCCAGCAATGAGCCGTGGGTCTAACCATGACCATGGATTCAATGCGGAGATACAGACCCTTGGAAGGATTAGACACAGGCATATTGTGAGGTTATTGGGTTTTTGTTCAAATCATGAAACAAATCTTTTGGTTTATGAGTATATGCCTAATGGGAGCTTGGGGGAAATGCTTCATGGTAAGAAAGGGGGCCATTTGTTATGGGATACAAGGTATAAGATTGCAGTGGAGTCGGCAAAGGGGCTTTGTTATCTCCACCATGATTGCTCGCCGTTGATCCTCCACCGTGATGTGAAATCCAATAACATCCTTCTTGACTCCAATTTTGAAGCTCATGTTGCTGATTTTGGCCTTGCCAAGTTCTTGCAAGATTCGGGTACCTCCGAGTGCATGTCTGCTATTGCTGGTTCTTATGGATATATAGCACCAGTCCAATGGGTTAAAGTGATGACGGATGGGAACAAGGAAAGTGTACTCAAAATCCTCGATCAAAGGCTCTCCACAATTCCGCTCCACGAGGTAATGCACGTATTCTATGTCGCTATGCTGTGCGTCGAAGAACAGGCCGTTGAACGGCCCACAATGCGTGAAGTTGTGCAGATACTAACAGAGCTCCCAAAGCCACTAAACTCAAAACAAGGTGACTCAAATGCTACAGATTCCCCTTCTCCGCTAGCATATGGTCTCGAGTCTTCTCCTAAAGAACATCATCATGAGCCACAGCCTCAATCACCACCACCTGATCTTCTTAGCATCTGA

Network for GWHGAAZE007309

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08263.13	LRRNT_2	27	67	1.10E-10
PF12799.8	LRR_4	143	182	2.50E-06
PF00560.34	LRR_1	288	310	0.28
PF00560.34	LRR_1	360	378	1.2
PF00069.26	Pkinase	696	866	6.10E-34

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-XI-1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	30.703
	SRR3591706	second leaf	29.890
	SRR3591707	mature leaf	11.910
	SRR3591708	Shoot apex	34.637
	SRR3591709	Stem	27.057
	SRR3591710	White floral bud	32.154
	SRR3591711	White flower	44.028
	SRR3591712	Green floral bud	13.121
	SRR3591713	Yellow flower	6.140
SRP173429	SRR8316895	Juvenile bud stage	19.280
	SRR8316896	Juvenile bud stage	21.441
	SRR8316897	Juvenile bud stage	6.922
	SRR8316894	Third green stage	9.021
	SRR8316900	Third green stage	17.342
	SRR8316901	Third green stage	14.650
	SRR8316898	Complete white stage	8.947
	SRR8316899	Complete white stage	17.273
	SRR8316903	Complete white stage	26.387
	SRR8316902	Silver flowering stage	13.427
	SRR8316904	Silver flowering stage	27.732
	SRR8316905	Silver flowering stage	12.474
	SRR8316906	Gold flowering stage	14.438
	SRR8316907	Gold flowering stage	14.748
	SRR8316908	Gold flowering stage	21.279
SRP132670	SRR6706286	Control	22.554
	SRR6706287	Light intensity 50%	23.000
	SRR6706288	Light intensity 20%	23.713
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	12.463
	CNS0095593	Slightly white alabastrum(diploid) 2	12.496
	CNS0095594	Slightly white alabastrum(diploid) 3	12.490
	CNS0095595	Whole white alabastrum(diploid) 2	11.978
	CNS0095596	Whole white alabastrum(diploid) 3	5.962
	CNS0095597	Whole white alabastrum(diploid) 4	11.785
	CNS0095598	Silvery flower (diploied) 1	42.740
	CNS0095599	Silvery flower (diploied) 2	32.016
	CNS0095600	Silvery flower (diploied) 3	31.258
	CNS0095601	Golden flower (diploid) 1	23.156
	CNS0095602	Golden flower (diploid) 2	26.821
	CNS0095603	Golden flower (diploid) 3	26.164
	CNS0095604	Slightly white alabastrum(tetraploid) 1	25.954
	CNS0095605	Slightly white alabastrum(tetraploid) 2	16.120
	CNS0095606	Slightly white alabastrum(tetraploid) 3	59.252
	CNS0095607	Whole white alabastrum(tetraploid) 1	19.462
	CNS0095608	Whole white alabastrum(tetraploid) 2	4.931
	CNS0095609	Whole white alabastrum(tetraploid) 3	21.896
	CNS0095610	Silvery flower (tetraploid) 1	34.672
	CNS0095611	Silvery flower (tetraploid) 2	37.611
	CNS0095612	Silvery flower (tetraploid) 3	73.480
	CNS0095613	Golden flower (tetraploid) 1	3.261
	CNS0095614	Golden flower (tetraploid) 2	34.020
	CNS0095615	Golden flower (tetraploid) 3	10.696
CRA001975	CRR073297	Stem 1	61.739
	CRR073298	Stem 2	50.004
	CRR073299	Stem 3	65.537
	CRR073300	Leaf 1	41.959
	CRR073301	Leaf 2	39.952
	CRR073302	Leaf 3	28.129
	CRR073303	Juvenile bud 1	33.849
	CRR073304	Juvenile bud 2	20.480
	CRR073305	Juvenile bud 3	45.862
	CRR073306	Third green 1	229.036
	CRR073307	Third green 2	185.324
	CRR073308	Third green 3	226.174
	CRR073309	Second white 1	176.157
	CRR073310	Second white 2	108.127
	CRR073311	Second white 3	84.845
	CRR073312	Silver flowering 1	36.318
	CRR073313	Silver flowering 2	61.791
	CRR073314	Silver flowering 3	41.315
	CRR073315	Gold flowering 1	8.292
	CRR073316	Gold flowering 2	6.900
	CRR073317	Gold flowering 3	10.148
	CRR073318	Tawny withering 1	41.830
	CRR073319	Tawny withering 2	24.983
	CRR073320	Tawny withering 3	50.270