Detail information of GWHGAAZE007302


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrNP_001275280.10branched-chain amino acid aminotransferase [Solanum tuberosum]
Swissprottr|Q9M401|BCAT3_ARATH0Branched-chain-amino-acid aminotransferase 3, chloroplastic {ECO:0000303|PubMed:12068099} (Precursor)
trEMBLtr|Q9SNY8|Q9SNY8_SOLTU0Branched-chain-amino-acid aminotransferase {ECO:0000256|RuleBase:RU004517}
TAIR10AT3G49680.18E-158branched-chain aminotransferase 3

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene4241993142425197-
GWHAAZE00000002mRNA4241993142425197-
GWHAAZE00000002exon4241993142420048-
GWHAAZE00000002exon4242020142420313-
GWHAAZE00000002exon4242049242420587-
GWHAAZE00000002exon4242073542420851-
GWHAAZE00000002exon4242313942423237-
GWHAAZE00000002exon4242412342424254-
GWHAAZE00000002exon4242463942424812-
GWHAAZE00000002exon4242499442425197-
GWHAAZE00000002CDS4242499442425197-
GWHAAZE00000002CDS4242463942424812-
GWHAAZE00000002CDS4242412342424254-
GWHAAZE00000002CDS4242313942423237-
GWHAAZE00000002CDS4242073542420851-
GWHAAZE00000002CDS4242049242420587-
GWHAAZE00000002CDS4242020142420313-
GWHAAZE00000002CDS4241993142420048-
Transcript Sequence

Network for GWHGAAZE007302

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01063.20Aminotran_4693063.20E-40
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K00826E2.6.1.42, ilvE Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
2-Oxocarboxylic acid metabolismmap01210
Biosynthesis of amino acidsmap01230
Cysteine and methionine metabolismmap00270
Valine, leucine and isoleucine degradationmap00280
Valine, leucine and isoleucine biosynthesismap00290
Pantothenate and CoA biosynthesismap00770
Glucosinolate biosynthesismap00966

Gene Ontology

GO term OntologyName
GO:0009081biological_processbranched-chain amino acid metabolic process
GO:0004084molecular_functionbranched-chain-amino-acid transaminase activity
GO:0003824molecular_functioncatalytic activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf59.134
SRR3591706second leaf49.086
SRR3591707mature leaf40.839
SRR3591708Shoot apex95.146
SRR3591709Stem48.168
SRR3591710White floral bud50.393
SRR3591711White flower73.432
SRR3591712Green floral bud88.169
SRR3591713Yellow flower60.329
SRP173429 SRR8316895Juvenile bud stage 55.785
SRR8316896Juvenile bud stage 87.037
SRR8316897Juvenile bud stage 33.958
SRR8316894Third green stage 34.361
SRR8316900Third green stage 102.960
SRR8316901Third green stage 98.435
SRR8316898Complete white stage 24.224
SRR8316899Complete white stage 110.666
SRR8316903Complete white stage 34.203
SRR8316902Silver flowering stage36.486
SRR8316904Silver flowering stage40.851
SRR8316905Silver flowering stage24.905
SRR8316906Gold flowering stage 81.445
SRR8316907Gold flowering stage 77.807
SRR8316908Gold flowering stage 82.272
SRP132670SRR6706286Control94.736
SRR6706287Light intensity 50%84.584
SRR6706288Light intensity 20%94.502
CNP0000432CNS0095592Slightly white alabastrum(diploid) 196.722
CNS0095593Slightly white alabastrum(diploid) 293.897
CNS0095594Slightly white alabastrum(diploid) 388.869
CNS0095595Whole white alabastrum(diploid) 287.080
CNS0095596Whole white alabastrum(diploid) 391.904
CNS0095597Whole white alabastrum(diploid) 479.163
CNS0095598Silvery flower (diploied) 180.523
CNS0095599Silvery flower (diploied) 268.534
CNS0095600Silvery flower (diploied) 382.875
CNS0095601Golden flower (diploid) 176.176
CNS0095602Golden flower (diploid) 280.665
CNS0095603Golden flower (diploid) 379.292
CNS0095604Slightly white alabastrum(tetraploid) 196.581
CNS0095605Slightly white alabastrum(tetraploid) 296.968
CNS0095606Slightly white alabastrum(tetraploid) 3129.267
CNS0095607Whole white alabastrum(tetraploid) 152.557
CNS0095608Whole white alabastrum(tetraploid) 250.996
CNS0095609Whole white alabastrum(tetraploid) 3108.883
CNS0095610Silvery flower (tetraploid) 1103.557
CNS0095611Silvery flower (tetraploid) 294.749
CNS0095612Silvery flower (tetraploid) 377.861
CNS0095613Golden flower (tetraploid) 185.862
CNS0095614Golden flower (tetraploid) 296.036
CNS0095615Golden flower (tetraploid) 386.630
CRA001975CRR073297Stem 194.608
CRR073298Stem 293.109
CRR073299Stem 396.607
CRR073300Leaf 1112.941
CRR073301Leaf 2112.107
CRR073302Leaf 3123.858
CRR073303Juvenile bud 1120.632
CRR073304Juvenile bud 286.609
CRR073305Juvenile bud 3111.948
CRR073306Third green 123.666
CRR073307Third green 219.860
CRR073308Third green 318.189
CRR073309Second white 143.103
CRR073310Second white 237.142
CRR073311Second white 334.542
CRR073312Silver flowering 140.284
CRR073313Silver flowering 255.215
CRR073314Silver flowering 342.206
CRR073315Gold flowering 164.764
CRR073316Gold flowering 274.062
CRR073317Gold flowering 374.672
CRR073318Tawny withering 165.713
CRR073319Tawny withering 254.970
CRR073320Tawny withering 357.598