Gene detail

Detail information of GWHGAAZE007294

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_009804948.1	PREDICTED: protein FAR-RED ELONGATED HYPOCOTYL 3 isoform X3 [Nicotiana sylvestris]
Swissprot	tr\|Q9LIE5\|FHY3_ARATH	Protein FAR-RED ELONGATED HYPOCOTYL 3
trEMBL	tr\|F6HTM8\|F6HTM8_VITVI	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB58038.1}
TAIR10	AT3G22170.2	far-red elongated hypocotyls 3

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	42231209	42239238	+
GWHAAZE00000002	mRNA	42231209	42239238	+
GWHAAZE00000002	exon	42231209	42232693	+
GWHAAZE00000002	exon	42232936	42232958	+
GWHAAZE00000002	exon	42233209	42233899	+
GWHAAZE00000002	exon	42234536	42234592	+
GWHAAZE00000002	exon	42234825	42234893	+
GWHAAZE00000002	exon	42234993	42235061	+
GWHAAZE00000002	exon	42238706	42238774	+
GWHAAZE00000002	exon	42238868	42238915	+
GWHAAZE00000002	exon	42239160	42239238	+
GWHAAZE00000002	CDS	42231209	42232693	+
GWHAAZE00000002	CDS	42232936	42232958	+
GWHAAZE00000002	CDS	42233209	42233899	+
GWHAAZE00000002	CDS	42234536	42234592	+
GWHAAZE00000002	CDS	42234825	42234893	+
GWHAAZE00000002	CDS	42234993	42235061	+
GWHAAZE00000002	CDS	42238706	42238774	+
GWHAAZE00000002	CDS	42238868	42238915	+
GWHAAZE00000002	CDS	42239160	42239216	+
GWHAAZE00000002	three_prime_UTR	42239217	42239238	+

Transcript Sequence
>GWHTAAZE007302 ATGGATATAGATCTTAGACTGCCTTCTGGGGAACAAAATGCAAAGGAAGAAGAAGAAGAAGATGTCGAGGAAGAAGAGGAACAAGAAGAGGAAGAACATGCAAATGGAACCGTGAACATGTTTGAAGGTGAAGATAAACTGCATAATAATGGAGATGGAGTGATGGGAAATATGGTGGTTCACGTTGAAGAGAAATTGCACGGTGAAGACGATTCCACGACAGATATGGTAGAGTCTAAAGAAGAGGATACAACAAATCTCGAGCCGCTTGCTGGTATGGAGTTTGAATCGCATGGGGCAGCTTATTCTTTTTATCAAGAGTATGCTAGGTCTATAGGATTCAATACAGCAATACAAAACAGCCGCCGTTCAAAGACGTCAAGAGAATTCATCGATGCGAAGTTTGCTTGTTCTAGATATGGAACCAAGCGTGAGTATGAAAACAAATCTCTTCTTAATCGACCGCAGCGTGTTAGACAAGGAAACAAGCAGCTAGATCATCCCGAGAATGCATCGGGTAGACGATCTTGTGCTAAGACGGATTGCAAAGCAAGCATGCATGTTAAGAGAAGACCCGATGGGAAATGGATCATACATAGATTCGAGAAGGAGCATAATCACCAACTTTTACCTGCGCAAGCCGTGAGCGAGCAAACAAGAAAGATGTATGCTGCAATGGCTAGACAATTTGCCGAGTACAAAAATGTGGTTGGCCTCAAGAATGACTCAAAAAACCCATTCGATAAAGGCCGTAATTTGGCTCTTGAACCCGGAGAGGCGAACATTTTGGTTGATTTTTTTACGCAGATGCAGTGTCTGAATTCGAACTTCTTTTACGCAATGGACGTAGGTGAAGATCAGAGGATGAGAAATCTGTTTTGGGCCGATGCTAAAAGTAGGCACGATTACCTAAATTTCGGGGATGTTGTGTGTTTCGATACTAGCTATGTTAGAAACAAATATAAAATGCCTCTTGCTGTTTTTGTTGGAGTAAATCAGCACTATCAGTTCATGTTGCTTGGATGTGCTCTCCTTTCGGATGAAAGTGCAGCTACTTTTTTATGGGTAATGCGGACATGGTTAAAAGCAATGGGTGGACAAGCTCCAAAAGTAATGATCACCGAGCAATACAAGTCCATGAAGTTGGTTATTTCATCGGTATTTCCATCTGCTCGCCATTGCTTTTGCTTGTGGCATATAATGGGAAAATTTTCTGAAACTCTTAGTTCTTTGATCAAACAGAACGATAGTTTTGTGAAGAAATTAGAGGAATGCATTTACAGGTCATGGACAGAGGAGGAGTTTGAGAAGAGATGGCAAAAATTGGTTGATGAGTTTGAACTTAAAGATAACGAGTGGATCCAAACATTGAACGAAGATCGTAAACAGTGGGTCCCGACCTACATGAAGGATGATGGGTTGTTTTTAGCCGGAATGTCTACTAGTCAACGCTCCGAGAGCGTGAACTCTTTCTTTGACAAATATGATGAGGCTATTCTACAGGATATATACGTGGAACAAGCCCCGGCTTTGAAGTCACCATCACCCTTTGAGAAGCATCTGTCAGGTGTGTACTCACATGCGGTTTTTAAGAAATTCCAAGTTGAGGTTTTGGGTGCGGTTGCGTGCATTCCTCGGAGAGAGAAACAAGAAGATTCAACTACAATTTTTAGGGTCCAAGATTTCGAGAAGAATCAAGACTTCACCGTTGTTTACAATGAATTAAAGTCAGAAGTATCTTGTGTTTGCCGTTTGTTTGAATTCAAAGGTTTTCTCTGTAGACATGCGATGATTGTTCTCCAAATATGCGGCCTTTCCACCATCCCATCTCAATATATACTCAAAAGGTGGATGAAAGATGCCAAGAACCACCGGTATATTCTAGAAGGATCATCGGAACAGGCGGTGGTGCAGGGGGTGCAATCTTCTTCTAGGGTTCAACGTTACAATGATCTATGCCAAAAAGCAATAAGATTGGGCGAAGAAGGATCATTATCTCAAGAGAGTTACAATTTTGCAATCCGTGCACTTGAAGATGCCTTTGGGAATTGTGTTGATCTTAATAACTCTAGTAAGAATCTTCTAGAAGCTGCTGGAACGTCTGCCTCTCCTGGTCTTCTTTGCCTTGAAGAAGATAACAACCAAAGAAGCATGATGAGCAAGACGAGTAAAAAGAAGAATCCAACTAAGAAAAGAAAGGTGAACTCAGAGCCTGATGTTATGGCAGTTGAGGCACAAGACAGCATGCAACAACTGGACAAAATGAGCTCTAGACCAGTCACTCTTGATGGATTTTTTGGTCCTCAACATAGTATGCAAGGAGTGGTACAGTTGAACTTAATGGCGCCTTCACGTGATAATTACTATGGTAATCAACAGACCATCCAGGGAATAGGACCACTGAGTTCTATGGCGCCGAACCATGATGGCTTTTATGGCACTCAGCAAACCATGCACGGACTGGCACAAATGGACTTTTTTCGAGCACCAGGTTTCACATATGGCATTCGGGATGACCCTAATGTGCGATCTGCACAGTTGCATGATGATCCATCAAGGCATGCATGAACACCTTTCTTACCACTAAGGT

Network for GWHGAAZE007294

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03101.16	FAR1	103	211	1.40E-26
PF10551.10	MULE	309	401	1.30E-25
PF04434.18	SWIM	575	601	4.80E-05

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	FAR1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0008270	molecular_function	zinc ion binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	26.622
	SRR3591706	second leaf	16.754
	SRR3591707	mature leaf	21.035
	SRR3591708	Shoot apex	29.169
	SRR3591709	Stem	25.432
	SRR3591710	White floral bud	21.803
	SRR3591711	White flower	26.307
	SRR3591712	Green floral bud	17.767
	SRR3591713	Yellow flower	25.966
SRP173429	SRR8316895	Juvenile bud stage	13.657
	SRR8316896	Juvenile bud stage	17.218
	SRR8316897	Juvenile bud stage	8.792
	SRR8316894	Third green stage	8.778
	SRR8316900	Third green stage	19.328
	SRR8316901	Third green stage	16.696
	SRR8316898	Complete white stage	8.559
	SRR8316899	Complete white stage	28.829
	SRR8316903	Complete white stage	16.290
	SRR8316902	Silver flowering stage	8.781
	SRR8316904	Silver flowering stage	15.301
	SRR8316905	Silver flowering stage	6.684
	SRR8316906	Gold flowering stage	26.246
	SRR8316907	Gold flowering stage	22.964
	SRR8316908	Gold flowering stage	25.654
SRP132670	SRR6706286	Control	18.776
	SRR6706287	Light intensity 50%	19.042
	SRR6706288	Light intensity 20%	19.906
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	11.568
	CNS0095593	Slightly white alabastrum(diploid) 2	11.517
	CNS0095594	Slightly white alabastrum(diploid) 3	9.539
	CNS0095595	Whole white alabastrum(diploid) 2	10.132
	CNS0095596	Whole white alabastrum(diploid) 3	8.985
	CNS0095597	Whole white alabastrum(diploid) 4	8.686
	CNS0095598	Silvery flower (diploied) 1	21.884
	CNS0095599	Silvery flower (diploied) 2	20.251
	CNS0095600	Silvery flower (diploied) 3	24.479
	CNS0095601	Golden flower (diploid) 1	18.364
	CNS0095602	Golden flower (diploid) 2	29.943
	CNS0095603	Golden flower (diploid) 3	28.810
	CNS0095604	Slightly white alabastrum(tetraploid) 1	14.696
	CNS0095605	Slightly white alabastrum(tetraploid) 2	11.371
	CNS0095606	Slightly white alabastrum(tetraploid) 3	27.764
	CNS0095607	Whole white alabastrum(tetraploid) 1	8.868
	CNS0095608	Whole white alabastrum(tetraploid) 2	6.375
	CNS0095609	Whole white alabastrum(tetraploid) 3	17.000
	CNS0095610	Silvery flower (tetraploid) 1	29.583
	CNS0095611	Silvery flower (tetraploid) 2	30.447
	CNS0095612	Silvery flower (tetraploid) 3	19.896
	CNS0095613	Golden flower (tetraploid) 1	14.485
	CNS0095614	Golden flower (tetraploid) 2	24.321
	CNS0095615	Golden flower (tetraploid) 3	24.619
CRA001975	CRR073297	Stem 1	21.265
	CRR073298	Stem 2	19.130
	CRR073299	Stem 3	19.012
	CRR073300	Leaf 1	21.853
	CRR073301	Leaf 2	15.973
	CRR073302	Leaf 3	14.120
	CRR073303	Juvenile bud 1	12.382
	CRR073304	Juvenile bud 2	11.562
	CRR073305	Juvenile bud 3	15.315
	CRR073306	Third green 1	4.678
	CRR073307	Third green 2	4.359
	CRR073308	Third green 3	6.710
	CRR073309	Second white 1	3.824
	CRR073310	Second white 2	8.840
	CRR073311	Second white 3	6.476
	CRR073312	Silver flowering 1	7.216
	CRR073313	Silver flowering 2	4.030
	CRR073314	Silver flowering 3	5.212
	CRR073315	Gold flowering 1	8.797
	CRR073316	Gold flowering 2	21.722
	CRR073317	Gold flowering 3	6.168
	CRR073318	Tawny withering 1	18.657
	CRR073319	Tawny withering 2	16.248
	CRR073320	Tawny withering 3	15.811