Gene detail

Detail information of GWHGAAZE007223

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	AJB84625.1	6.3907E-130	violaxanthin de-epoxidase [Camellia sinensis]
Swissprot	tr\|Q9SM43\|VDE_SPIOL	6E-106	Violaxanthin de-epoxidase, chloroplastic (Precursor)
trEMBL	tr\|A0A067J966\|A0A067J966_JATCU	8E-129	Uncharacterized protein {ECO:0000313\|EMBL:KDP20287.1}
TAIR10	AT1G08550.2	4E-78	non-photochemical quenching 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	40792675	40796735	+
GWHAAZE00000002	mRNA	40792675	40796735	+
GWHAAZE00000002	exon	40792675	40792808	+
GWHAAZE00000002	exon	40793752	40793848	+
GWHAAZE00000002	exon	40794513	40794874	+
GWHAAZE00000002	exon	40795541	40795556	+
GWHAAZE00000002	exon	40796463	40796735	+
GWHAAZE00000002	CDS	40792675	40792808	+
GWHAAZE00000002	CDS	40793752	40793848	+
GWHAAZE00000002	CDS	40794513	40794874	+
GWHAAZE00000002	CDS	40795541	40795556	+
GWHAAZE00000002	CDS	40796463	40796735	+

Transcript Sequence
>GWHTAAZE007231 ATGCATACTATACGGAGGCAATGGAGCCAATTCATAACAGTAGCTCTCATACTGTCAGGCATATTCTTTGTTATTCCAACAGCTGATGCAGTAGATGCCCTCAAAACTTGTTCTTGCTTACTGAAGGAGTGCAGGGTGGAACTTGCAAAGTGCATTGCGAACCCATCGTGTGCAGCTAATGTGGCTTGCCTCCAAACCTGCAACAATAGACCTGATGAGACTGAGTGCCAGCGTTGTAGACCAGTTCAACGAGTGTGCAGTCTCACGAAAGAAATCGTGCCCCAAAAATCAGGCGTGGGTGAATTTCCGGTCCCTGCTCCTGATTTGCTAGTTAAAAGCTTCAACATCAACGATTTCACTGGGAAGTGGTATATAACTAGCGGCTTAAATCCTACATTTGACGCCTTTGATTGCCAATTGCATGAGTTCCATATGGAATCAAACAAACTTGTTGGGAATTTGACATGGCGAATTCGGACCCCAGATGGTGGATTCTTTACTCGATCAGCTGTTCAGAAATTTGTACAAGATCCGACCCAACCAGGCATTCTGTACAATCACAATAACGAGTTTCTTCACTACGAAGATGACTGTACCTATGCTATTCAGACTGGAGAAGACGGGAAGAAGGAGAAAACAATCATAAGAGAGGTCGAGCAGATTGAGGAAGAGGTTGAGAAGGAGGTTGAGAAGGTGGAGTCCACTGAGAGGAGCTTGTTCCAGCGGCTAGCAGAAGGGTTTGAAGAGCTCAAAAAGGATGAAGAAAATTTCATCAGGGAGCTGAGTAAAGAAGAGATGGATGTTTTGAGTGAGCTTAAAATGGAAGCTGGAGAACTGGAAAAGCTCTTTGGAAGAGCATTGCCATTGAGGAAGTTGAGATAA

Network for GWHGAAZE007223

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07137.12	VDE	36	203	4.70E-52

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K09839	VDE, NPQ1	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Carotenoid biosynthesis	map00906

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0009507	cellular_component	chloroplast
GO:0046422	molecular_function	violaxanthin de-epoxidase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	3.225
	SRR3591706	second leaf	7.587
	SRR3591707	mature leaf	5.682
	SRR3591708	Shoot apex	3.921
	SRR3591709	Stem	1.818
	SRR3591710	White floral bud	1.179
	SRR3591711	White flower	1.087
	SRR3591712	Green floral bud	0.794
	SRR3591713	Yellow flower	1.198
SRP173429	SRR8316895	Juvenile bud stage	2.263
	SRR8316896	Juvenile bud stage	2.118
	SRR8316897	Juvenile bud stage	1.104
	SRR8316894	Third green stage	0.912
	SRR8316900	Third green stage	2.331
	SRR8316901	Third green stage	2.221
	SRR8316898	Complete white stage	1.443
	SRR8316899	Complete white stage	3.911
	SRR8316903	Complete white stage	2.572
	SRR8316902	Silver flowering stage	1.310
	SRR8316904	Silver flowering stage	1.211
	SRR8316905	Silver flowering stage	0.814
	SRR8316906	Gold flowering stage	1.339
	SRR8316907	Gold flowering stage	0.937
	SRR8316908	Gold flowering stage	1.638
SRP132670	SRR6706286	Control	1.741
	SRR6706287	Light intensity 50%	2.157
	SRR6706288	Light intensity 20%	1.343
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.669
	CNS0095593	Slightly white alabastrum(diploid) 2	1.942
	CNS0095594	Slightly white alabastrum(diploid) 3	1.344
	CNS0095595	Whole white alabastrum(diploid) 2	1.259
	CNS0095596	Whole white alabastrum(diploid) 3	1.359
	CNS0095597	Whole white alabastrum(diploid) 4	2.688
	CNS0095598	Silvery flower (diploied) 1	3.203
	CNS0095599	Silvery flower (diploied) 2	4.360
	CNS0095600	Silvery flower (diploied) 3	3.257
	CNS0095601	Golden flower (diploid) 1	2.764
	CNS0095602	Golden flower (diploid) 2	3.260
	CNS0095603	Golden flower (diploid) 3	2.987
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.475
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.956
	CNS0095606	Slightly white alabastrum(tetraploid) 3	2.121
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.820
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.101
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.841
	CNS0095610	Silvery flower (tetraploid) 1	3.471
	CNS0095611	Silvery flower (tetraploid) 2	2.702
	CNS0095612	Silvery flower (tetraploid) 3	0.372
	CNS0095613	Golden flower (tetraploid) 1	1.918
	CNS0095614	Golden flower (tetraploid) 2	1.967
	CNS0095615	Golden flower (tetraploid) 3	0.413
CRA001975	CRR073297	Stem 1	4.194
	CRR073298	Stem 2	2.290
	CRR073299	Stem 3	2.213
	CRR073300	Leaf 1	1.989
	CRR073301	Leaf 2	2.376
	CRR073302	Leaf 3	0.825
	CRR073303	Juvenile bud 1	1.975
	CRR073304	Juvenile bud 2	1.747
	CRR073305	Juvenile bud 3	1.891
	CRR073306	Third green 1	0.508
	CRR073307	Third green 2	0.305
	CRR073308	Third green 3	0.738
	CRR073309	Second white 1	0.720
	CRR073310	Second white 2	0.595
	CRR073311	Second white 3	0.410
	CRR073312	Silver flowering 1	0.027
	CRR073313	Silver flowering 2	0.475
	CRR073314	Silver flowering 3	0.323
	CRR073315	Gold flowering 1	13.780
	CRR073316	Gold flowering 2	16.482
	CRR073317	Gold flowering 3	8.235
	CRR073318	Tawny withering 1	2.246
	CRR073319	Tawny withering 2	3.053
	CRR073320	Tawny withering 3	2.427