Gene detail

Detail information of GWHGAAZE007200

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010653635.1	0	PREDICTED: probable mediator of RNA polymerase II transcription subunit 26b isoform X1 [Vitis vinifera]
Swissprot	tr\|Q9FHK9\|MD26B_ARATH	2E-121	Probable mediator of RNA polymerase II transcription subunit 26b
trEMBL	tr\|F6HQP1\|F6HQP1_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB57122.1}
TAIR10	AT5G05140.1	1E-94	Transcription elongation factor (TFIIS) family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	40369165	40372971	+
GWHAAZE00000002	mRNA	40369165	40372971	+
GWHAAZE00000002	exon	40369165	40369674	+
GWHAAZE00000002	exon	40370038	40370106	+
GWHAAZE00000002	exon	40370237	40370319	+
GWHAAZE00000002	exon	40370927	40370979	+
GWHAAZE00000002	exon	40371088	40371203	+
GWHAAZE00000002	exon	40371306	40371333	+
GWHAAZE00000002	exon	40371441	40371772	+
GWHAAZE00000002	exon	40371866	40371956	+
GWHAAZE00000002	exon	40372678	40372971	+
GWHAAZE00000002	CDS	40369165	40369674	+
GWHAAZE00000002	CDS	40370038	40370106	+
GWHAAZE00000002	CDS	40370237	40370319	+
GWHAAZE00000002	CDS	40370927	40370979	+
GWHAAZE00000002	CDS	40371088	40371203	+
GWHAAZE00000002	CDS	40371306	40371333	+
GWHAAZE00000002	CDS	40371441	40371772	+
GWHAAZE00000002	CDS	40371866	40371956	+
GWHAAZE00000002	CDS	40372678	40372802	+
GWHAAZE00000002	three_prime_UTR	40372803	40372971	+

Transcript Sequence
>GWHTAAZE007208 ATGGAATTGAAATCTAGTGCCCTTGATAATTGGAGGAATTACTTTAGAACTGCAAATTCAGATATATTTGATATAATTGAGCACGCGATTTTGGTGGCAGCTTCTGATTGCCCCAAAGAGTTCAGATTGAGGAGAGATAAAATTGCAGAGACTTTGTTTTCTTGTAAAATGACTCGGTGTACGGGTTGTGATCATGTGGAGTTGGCTGTACCGGAAGATGGTGAGGATGAGGATTGTAAGAGTGGATTTGATAGAGGTGGGTGTGAATTCGAGGCTCGGGGTAGTAAAGATAGTAAGGTTAATAGTGGTATTGATCATGTAGAGATGAATAGTGGTAGTAAAGATAGTAAGGTTGAGAGTGGTATTGATCATGTAGAGATGAATATGAACCAGCTTAGCAATTATAGCTTTGGTGAAGCTGAGGCATTGACAGATGAGATTGAAGAAGAGAGTCAGATTTTCGGGGAGGTTTTGAGGATCAAGAAGATCGTTGATAATAGTAAAGATGAGCCTGATTCTGTACTATTTGATTCACTGAGGAGGCTTCAACTGATGGCTTTGTCTGTGGAAACTCTAAAGGCAACTGAGATTGGAAAGTCTGTGAAGTTTCTGCGAAAGCATTCATCGAAGGAGATCCGAGAATTGGCACGTACGCTCATTGAGGACTGGATGGCTTTGGTAGATGAATGGGTTATTGCTTCCGCGAATATTGGAGGAGCCGAAGCTACCCCGGAGTCAGTTAACCCTTCTGTGCTCGATGAAGAGGAAGGGCTCCCTTCTCCTCCGTTGGATGACATTGCATTTTTCTCTACTTCAATGGAGCTCTCTCAATTCTTTGATGGCATGGATGATGAAGGAAATCCTCAAAACGGTGGGGAATTCAACAAGAACCGCGAAAACGGCAGAAATCCGTCAGTGGAGAACCGTAATGCTCCTAAATTGAAACGACCATTACCCAATGAGTCGAACGGTCATCCAAAGGACAAGGTGGGCGAACAAGTGAAGAACCAAGAAAATTCACTAAAGAAACAGGGGACTATTTTGAAACCTCATAAGCCCTCAATCGTTGACTCTGGGCCTGGCAGACCTACGAAATCAAGTGTGGAACTAAAGGGACGGAATGAGAACAAATTCATACAAAAACCAGAGAAACCAATTGTCCATAGGAGGCCATTGGCTTCTCAACAAGACAAATCAAAGTGTTCGGGTGAGGCTGCTGAGCAAGTAAAACTTGAAGCAACAAAGAGGAAGCTCCAAGAGCTCTACCAAAAGGCCGAGAACGCCAAGAAGCAACGGACGATACAAGTGATGGAGTTACAAGATCTCCCCAAACAGGGTCTTGGCCCTAAAATTCCACTCCCTAAACCAGTCAATCGGAACAGGCCACGGTCAAATGGGCGGCACTGATTTCTCAGTTTCGCCCATCTTAGTTCAATAACTTCACGGGGTTAATTTCTCCCATTCAAGTCGGTGCTGTTCGGGTTTTTGGCAACCCACTTTGCTTGAGTGTTCCTTGAAGATCTCAAAGCTTGTGGTAAAATCTATATATGTGATTATGGAGAGGCAAAGGTTTCTT

Network for GWHGAAZE007200

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08711.12	Med26	179	227	7.30E-12

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	IWS1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005634	cellular_component	nucleus

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	34.153
	SRR3591706	second leaf	9.755
	SRR3591707	mature leaf	15.002
	SRR3591708	Shoot apex	18.021
	SRR3591709	Stem	32.388
	SRR3591710	White floral bud	31.567
	SRR3591711	White flower	34.892
	SRR3591712	Green floral bud	21.167
	SRR3591713	Yellow flower	32.869
SRP173429	SRR8316895	Juvenile bud stage	30.592
	SRR8316896	Juvenile bud stage	35.065
	SRR8316897	Juvenile bud stage	29.313
	SRR8316894	Third green stage	8.084
	SRR8316900	Third green stage	28.242
	SRR8316901	Third green stage	32.429
	SRR8316898	Complete white stage	15.680
	SRR8316899	Complete white stage	48.658
	SRR8316903	Complete white stage	27.423
	SRR8316902	Silver flowering stage	12.354
	SRR8316904	Silver flowering stage	17.052
	SRR8316905	Silver flowering stage	7.161
	SRR8316906	Gold flowering stage	25.222
	SRR8316907	Gold flowering stage	25.850
	SRR8316908	Gold flowering stage	33.568
SRP132670	SRR6706286	Control	26.030
	SRR6706287	Light intensity 50%	30.652
	SRR6706288	Light intensity 20%	30.822
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	13.581
	CNS0095593	Slightly white alabastrum(diploid) 2	18.970
	CNS0095594	Slightly white alabastrum(diploid) 3	20.184
	CNS0095595	Whole white alabastrum(diploid) 2	21.853
	CNS0095596	Whole white alabastrum(diploid) 3	11.678
	CNS0095597	Whole white alabastrum(diploid) 4	16.060
	CNS0095598	Silvery flower (diploied) 1	35.556
	CNS0095599	Silvery flower (diploied) 2	42.029
	CNS0095600	Silvery flower (diploied) 3	30.840
	CNS0095601	Golden flower (diploid) 1	29.545
	CNS0095602	Golden flower (diploid) 2	32.505
	CNS0095603	Golden flower (diploid) 3	33.518
	CNS0095604	Slightly white alabastrum(tetraploid) 1	13.186
	CNS0095605	Slightly white alabastrum(tetraploid) 2	13.006
	CNS0095606	Slightly white alabastrum(tetraploid) 3	20.552
	CNS0095607	Whole white alabastrum(tetraploid) 1	13.749
	CNS0095608	Whole white alabastrum(tetraploid) 2	11.365
	CNS0095609	Whole white alabastrum(tetraploid) 3	26.445
	CNS0095610	Silvery flower (tetraploid) 1	30.345
	CNS0095611	Silvery flower (tetraploid) 2	24.201
	CNS0095612	Silvery flower (tetraploid) 3	32.607
	CNS0095613	Golden flower (tetraploid) 1	23.442
	CNS0095614	Golden flower (tetraploid) 2	28.239
	CNS0095615	Golden flower (tetraploid) 3	38.673
CRA001975	CRR073297	Stem 1	34.352
	CRR073298	Stem 2	34.213
	CRR073299	Stem 3	19.613
	CRR073300	Leaf 1	48.226
	CRR073301	Leaf 2	53.917
	CRR073302	Leaf 3	32.090
	CRR073303	Juvenile bud 1	37.882
	CRR073304	Juvenile bud 2	36.084
	CRR073305	Juvenile bud 3	45.397
	CRR073306	Third green 1	23.534
	CRR073307	Third green 2	21.030
	CRR073308	Third green 3	24.781
	CRR073309	Second white 1	12.142
	CRR073310	Second white 2	20.641
	CRR073311	Second white 3	21.406
	CRR073312	Silver flowering 1	33.743
	CRR073313	Silver flowering 2	26.886
	CRR073314	Silver flowering 3	39.412
	CRR073315	Gold flowering 1	12.781
	CRR073316	Gold flowering 2	20.286
	CRR073317	Gold flowering 3	8.993
	CRR073318	Tawny withering 1	24.204
	CRR073319	Tawny withering 2	41.462
	CRR073320	Tawny withering 3	27.798