Gene detail

Detail information of GWHGAAZE007131

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002308930.2	0	hypothetical protein POPTR_0006s04650g [Populus trichocarpa]
Swissprot	tr\|O22213\|CKX1_ARATH	0	Cytokinin dehydrogenase 1 (Precursor)
trEMBL	tr\|B9H9J6\|B9H9J6_POPTR	0	Uncharacterized protein {ECO:0000313\|EMBL:EEE92453.2}
TAIR10	AT2G41510.1	2E-162	cytokinin oxidase/dehydrogenase 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	38811989	38813886	-
GWHAAZE00000002	mRNA	38811989	38813886	-
GWHAAZE00000002	exon	38811989	38812312	-
GWHAAZE00000002	exon	38812408	38812668	-
GWHAAZE00000002	exon	38812774	38812901	-
GWHAAZE00000002	exon	38813268	38813886	-
GWHAAZE00000002	CDS	38813268	38813886	-
GWHAAZE00000002	CDS	38812774	38812901	-
GWHAAZE00000002	CDS	38812408	38812668	-
GWHAAZE00000002	CDS	38811989	38812312	-

Transcript Sequence
>GWHTAAZE007139 ATGGGCTTCAAAATACTCTCTGCCCTGTTAGTGTTTTGCAATATTAACAAATACAACAAAAACCACCTCTGTTTAAACAACCCTTTTGCCAGCCCTACTCTCTTCCCCACAACAATCCCCTCATCATTAAAATCACTCAAATTTGATGGGAATTTAACCTTAGAAAACACCCATTATGCTGCCACTGATTTCGGCAACATACACCACCACCCTCCGGCGGCGGTCCTCCACCCAAAATCCGTCTCCGATATCTCCACCACCATAAAACATATCTTCCAAATGGGTCCCACTTCGAGTCTCACTGTTGCGGCTAGAGGCCACGGCCACTCCCTTCAAGGCCAAGCACAAACTCATCAAGGAGTTGTTATCGACATGGAGTCGCTTCAAGGGGAAAAAATGTACTTTCACACTGGGGAGAGGCCTTACGTGGATGTGCCTGGTGGCCATTTATGGATTAATGTTCTGCATGAGAGTCTTAAACATGGGCTAGCGCCGAAATCTTGGACGGATTATCTCCACCTGACGGTTGGCGGTACTTTGTCAAACGCCGGATTCAGCGGCCAAGCTTTCCGGCACGGTCCGCAGATCAATAATGTGTACCAGCTAGAGGTTGTAACAGGAACCGGAGAGGTTATTACCTGTACAGAACAGCGAAACGCGGACCTTTTCTATGGAGTTCTTGGAGGACTTGGACAGTTTGGGATCATTACCCGGGCTAGAATCTCTCTCGAACCAGCACCGAGTATGGTGAAATGGATTAGAGTACTTTATTCAGATTTTACGACATTTTCCAATGACCAAGAGCAACTGATATTGTCAAAGCATTCCTTCGACTATATAGAAGGATTCGTCTTAATAAACAGAACTGGTCTGCTTAATAATTGGCGAACCTCATTCAATCCCAAACACCCGGATCAAGCCAGCCAGTTCAATTCCGAAGGAAAAACTCTCTTCTGTTTGGAAATGGCCAAATACTTCAACCCGAAAGAGAGTGATAGTATGAACAAGAAAATTGAGAGCTGGTTATCCAAGTTGAATTATATTCAATCAACCCTCCTCTTATCAGAGGTTTCGTATTCGGAGTTCCTTGATAGAGTGCATGGTTCAGAGTTGAAGCTCAAAGAGAAGGGGTTGTGGGAGGTTCCCCATCCATGGCTAAACCTTCTTGTTCCTAAAAGCCGAATTCAAAAGTTTGCACAAGAAGTTTTTGGGAATATTCTTAAAGACACAAGCAACGGTCCTGTACTCGTCTACCCAATTAACAAATTAGGGTACAAAAGTAATCCTACTCTATGGTTCAAGTACACACAAATACGAATACACAACAACTGA

Network for GWHGAAZE007131

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01565.24	FAD_binding_4	72	214	7.50E-19
PF09265.11	Cytokin-bind	247	428	5.00E-66

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00279	CKX	Zeatin biosynthesis	map00908

Gene Ontology

GO term	Ontology	Name
GO:0009690	biological_process	cytokinin metabolic process
GO:0055114	biological_process	oxidation-reduction process
GO:0019139	molecular_function	cytokinin dehydrogenase activity
GO:0050660	molecular_function	flavin adenine dinucleotide binding
GO:0016491	molecular_function	oxidoreductase activity
GO:0071949	molecular_function	FAD binding
GO:0003824	molecular_function	catalytic activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.083
	SRR3591706	second leaf	0.059
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.197
	SRR3591709	Stem	8.425
	SRR3591710	White floral bud	0.000
	SRR3591711	White flower	0.000
	SRR3591712	Green floral bud	0.000
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.000
	SRR8316896	Juvenile bud stage	0.090
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.000
	SRR8316900	Third green stage	0.000
	SRR8316901	Third green stage	0.000
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.000
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.028
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.080
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.000
	SRR6706287	Light intensity 50%	0.000
	SRR6706288	Light intensity 20%	0.000
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.000
	CNS0095593	Slightly white alabastrum(diploid) 2	0.000
	CNS0095594	Slightly white alabastrum(diploid) 3	0.000
	CNS0095595	Whole white alabastrum(diploid) 2	0.000
	CNS0095596	Whole white alabastrum(diploid) 3	0.000
	CNS0095597	Whole white alabastrum(diploid) 4	0.000
	CNS0095598	Silvery flower (diploied) 1	0.000
	CNS0095599	Silvery flower (diploied) 2	0.000
	CNS0095600	Silvery flower (diploied) 3	0.007
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.000
	CNS0095603	Golden flower (diploid) 3	0.000
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.000
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.000
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.000
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.000
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.000
	CNS0095612	Silvery flower (tetraploid) 3	0.000
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.000
	CRR073298	Stem 2	0.000
	CRR073299	Stem 3	0.000
	CRR073300	Leaf 1	0.000
	CRR073301	Leaf 2	0.000
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.060
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.000