Gene detail

Detail information of GWHGAAZE007125

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP14167.1	5.7038E-135	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q8W4L0\|CML49_ARATH	5E-125	Probable calcium-binding protein CML49
trEMBL	tr\|A0A068V0U9\|A0A068V0U9_COFCA	2E-135	Coffea canephora DH200=94 genomic scaffold, scaffold_80 {ECO:0000313\|EMBL:CDP14167.1}
TAIR10	AT3G10300.3	6E-81	Calcium-binding EF-hand family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	38721842	38725015	+
GWHAAZE00000002	mRNA	38721842	38725015	+
GWHAAZE00000002	exon	38721842	38722406	+
GWHAAZE00000002	exon	38724094	38724140	+
GWHAAZE00000002	exon	38724231	38724406	+
GWHAAZE00000002	exon	38724593	38724611	+
GWHAAZE00000002	exon	38724911	38725015	+
GWHAAZE00000002	CDS	38721842	38722406	+
GWHAAZE00000002	CDS	38724094	38724140	+
GWHAAZE00000002	CDS	38724231	38724406	+
GWHAAZE00000002	CDS	38724593	38724611	+
GWHAAZE00000002	CDS	38724911	38725015	+

Transcript Sequence
>GWHTAAZE007133 ATGGCCGGATACCCACAAAACCCATCGGGCTACGGCCAACCTTACACCCCCTCACCTTACGGCCCCCCACCACCGGGTCCACAACAACCCTACGGTGCCCAACCCCAATCCCAATCAGCCCAGTCCCCCTACGCACCCGTAGCTGCTCCCTACGGGGCACCGTCAGCCCCCTACGCCGCGCCACAGGGAAACAAACCCCCCAAAGAACACAACAAACCCACCCCCACCGCCCCGTACGGAGCCCCCACTCCCGCTGCGCCATACGGTGCTCCCACCCCTGCTGCACCGTACGGCGCACCTCAGCAGCCGCACTCCGGCGGATACCCTCCGGCAGCGGGGGCGCCTTACGGAAGCAGCCCTTTTGCGTCGCTAGTGCCGTCGGCGTTCCCGCCAGGCACGGACCCGAACGTGGTGTCTTGCTTCCAGATGGCAGACAGGGACAGGAGCGGGTTTATAGATGATAAGGAGCTGCAGAGTGCTCTGTCTGGGTATAATCAGGGTTTTAGTTTGAGGACTGTTCATCTCCTCATGTATCTCTTCACTAACACCAACACCAGGCAGATCGGGCCAAAGGAGTTTACTGCAGTCTTCTATAGTCTCCAGAGCTGGAGGTCAAATTTCGAGAAATTTGACCGCGATCGAAGCGGCAAAATCGATTCCTCAGAATTGAGGGATGCACTTGCGAGCCTTGGATTCTCAGTGTCTCCGGTTGTTTTGGATTTGTTGGTCTCAAAGTTTGATAAAAGTGGTGGCCATAACAAGGCCATTGAATATGACAATTTCATCGAGTGCTGTCTCACTGTGAAGGGACTAACTGAGAAGTTTAAGGAGAAGGACACTGCTTACTCTGGCAACGCAACTTTTACTTACGAGTCCTTCATGTTGACAGTTTTGCCTTTCCTCATTGCGTAG

Network for GWHGAAZE007125

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13202.7	EF-hand_5	139	159	0.00015
PF13405.7	EF-hand_6	203	231	5.30E-06

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K13448	CML	Plant-pathogen interaction	map04626

Gene Ontology

GO term	Ontology	Name
GO:0005509	molecular_function	calcium ion binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.169
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.673
	SRR3591709	Stem	0.504
	SRR3591710	White floral bud	0.382
	SRR3591711	White flower	1.081
	SRR3591712	Green floral bud	0.274
	SRR3591713	Yellow flower	6.941
SRP173429	SRR8316895	Juvenile bud stage	0.665
	SRR8316896	Juvenile bud stage	1.379
	SRR8316897	Juvenile bud stage	0.682
	SRR8316894	Third green stage	0.485
	SRR8316900	Third green stage	0.483
	SRR8316901	Third green stage	0.491
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.663
	SRR8316903	Complete white stage	0.939
	SRR8316902	Silver flowering stage	1.282
	SRR8316904	Silver flowering stage	1.572
	SRR8316905	Silver flowering stage	0.387
	SRR8316906	Gold flowering stage	5.001
	SRR8316907	Gold flowering stage	4.980
	SRR8316908	Gold flowering stage	15.723
SRP132670	SRR6706286	Control	0.699
	SRR6706287	Light intensity 50%	0.702
	SRR6706288	Light intensity 20%	0.274
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.466
	CNS0095593	Slightly white alabastrum(diploid) 2	0.500
	CNS0095594	Slightly white alabastrum(diploid) 3	1.124
	CNS0095595	Whole white alabastrum(diploid) 2	0.974
	CNS0095596	Whole white alabastrum(diploid) 3	0.097
	CNS0095597	Whole white alabastrum(diploid) 4	0.539
	CNS0095598	Silvery flower (diploied) 1	3.309
	CNS0095599	Silvery flower (diploied) 2	0.751
	CNS0095600	Silvery flower (diploied) 3	1.979
	CNS0095601	Golden flower (diploid) 1	3.077
	CNS0095602	Golden flower (diploid) 2	2.135
	CNS0095603	Golden flower (diploid) 3	2.220
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.162
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.102
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.219
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.424
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.164
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.056
	CNS0095610	Silvery flower (tetraploid) 1	0.208
	CNS0095611	Silvery flower (tetraploid) 2	0.080
	CNS0095612	Silvery flower (tetraploid) 3	0.760
	CNS0095613	Golden flower (tetraploid) 1	1.513
	CNS0095614	Golden flower (tetraploid) 2	1.587
	CNS0095615	Golden flower (tetraploid) 3	0.454
CRA001975	CRR073297	Stem 1	1.426
	CRR073298	Stem 2	1.273
	CRR073299	Stem 3	1.605
	CRR073300	Leaf 1	0.000
	CRR073301	Leaf 2	0.817
	CRR073302	Leaf 3	0.445
	CRR073303	Juvenile bud 1	0.051
	CRR073304	Juvenile bud 2	0.113
	CRR073305	Juvenile bud 3	0.130
	CRR073306	Third green 1	0.754
	CRR073307	Third green 2	0.658
	CRR073308	Third green 3	1.195
	CRR073309	Second white 1	4.342
	CRR073310	Second white 2	3.451
	CRR073311	Second white 3	3.525
	CRR073312	Silver flowering 1	22.169
	CRR073313	Silver flowering 2	17.889
	CRR073314	Silver flowering 3	18.548
	CRR073315	Gold flowering 1	0.494
	CRR073316	Gold flowering 2	0.109
	CRR073317	Gold flowering 3	0.324
	CRR073318	Tawny withering 1	5.363
	CRR073319	Tawny withering 2	9.238
	CRR073320	Tawny withering 3	2.670