Gene detail

Detail information of GWHGAAZE007118

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010312093.1	0	PREDICTED: transcription initiation factor IIB-2 isoform X2 [Solanum lycopersicum]
Swissprot	tr\|Q9SS44\|TF2B2_ARATH	0	Transcription initiation factor IIB-2
trEMBL	tr\|K4D2H7\|K4D2H7_SOLLC	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Solyc10g079360.1.1}
TAIR10	AT3G10330.1	4E-149	Cyclin-like family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	38650348	38657068	+
GWHAAZE00000002	mRNA	38650348	38657068	+
GWHAAZE00000002	exon	38650348	38650915	+
GWHAAZE00000002	exon	38653732	38653756	+
GWHAAZE00000002	exon	38654736	38654865	+
GWHAAZE00000002	exon	38655212	38655342	+
GWHAAZE00000002	exon	38655735	38655823	+
GWHAAZE00000002	exon	38656960	38657068	+
GWHAAZE00000002	five_prime_UTR	38650348	38650565	+
GWHAAZE00000002	CDS	38650566	38650915	+
GWHAAZE00000002	CDS	38653732	38653756	+
GWHAAZE00000002	CDS	38654736	38654865	+
GWHAAZE00000002	CDS	38655212	38655342	+
GWHAAZE00000002	CDS	38655735	38655823	+
GWHAAZE00000002	CDS	38656960	38657068	+

Transcript Sequence
>GWHTAAZE007126 ACCAATATAAATCTCCCTCTCCCCTTTACGTTTCAGTTTCGCCCTTTCAGTTTCGTCTTCATTTCCATCCTTCAAACTAATCATCAGTCCAACCGAAGATCAAATAAACCCCCCAAAAACCATTACACAAACCCTAAACTCCACAAACCCTAGAATACGAGCCCTAAACACACAAACAACATAATTTATATATTAATTGATTGAGGATCTCTTGATCCATGGATGCTTACTGCTCGGATTGCAAGAAGAACACGGAGGTGGTCTTCGATCACTCGGCCGGTGACACTGTTTGCTCCGAGTGCGGCCTTGTCTTGGAGTCCCATTCGATTGACGAGACCTCGGAGTGGAGGACTTTTGCCAATGAGTCTGGGGATAACGATCCTGTCCGTGTCGGTGGCCCCACTAATCCTCTACTTGCTGACGGAGGTCTATCCACGGTGATATCCAAGCCCAATGGCGTGACTAGTGATTTCCTTTCGTCCTCGTTGGGCCGGTGGCAGAATCGTGGGTCCAATCCCGATCGGTCTCTTATTTTGGCCTTTAAGACCATTGCCACTATGTCTGACAGGTTGGGCCTTGTTGCAACCATAAAGGATCGAGCTAATGAGATATACAAGAAAGTAGAAGATCAAAAGTCTAGTAGAGGAAGAAACCAGGATGCAATTTTGGCTGCTTGCTTGTACATCGCTTGTAGACAAGAAGACAAACCCCGCACTGTAAAAGAAATTTGCTCTGTTGCGAACGGAGCAACAAAGAAGGAAATTGGCCGAGCAAAAGAATATATAGTTAAACAACTAGAGCTTGAGATGGGTCAGTCGGTGGAGATGGGAACTATACATGCTGGGGATTTTATGAGGCGTTTTTGTTCGAATCTTGGTATGACCAATCAAACGGTTAAAGCTGCACAAGAATCTGTCAAAAAATCAGAAGAGTTTGATATAAGGAGGAGCCCTATATCTATTGCAGCGGCAGTTATCTATATTGTGACTCAGCTTTCGGACGAGAAGAAACCCCTCAAAGGTAAAATTTACACCTTCAGCTCATTCTCTTGA

Network for GWHGAAZE007118

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08271.13	TF_Zn_Ribbon	4	46	5.50E-15
PF00382.20	TFIIB	111	175	4.70E-20

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K03124	TFIIB, GTF2B, SUA7, tfb	Basal transcription factors	map03022

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0070897	biological_process	transcription preinitiation complex assembly
GO:0017025	molecular_function	TBP-class protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	34.328
	SRR3591706	second leaf	22.213
	SRR3591707	mature leaf	22.808
	SRR3591708	Shoot apex	29.458
	SRR3591709	Stem	31.312
	SRR3591710	White floral bud	34.227
	SRR3591711	White flower	38.021
	SRR3591712	Green floral bud	30.549
	SRR3591713	Yellow flower	36.709
SRP173429	SRR8316895	Juvenile bud stage	25.529
	SRR8316896	Juvenile bud stage	32.677
	SRR8316897	Juvenile bud stage	16.974
	SRR8316894	Third green stage	10.917
	SRR8316900	Third green stage	26.990
	SRR8316901	Third green stage	32.015
	SRR8316898	Complete white stage	16.515
	SRR8316899	Complete white stage	52.817
	SRR8316903	Complete white stage	27.697
	SRR8316902	Silver flowering stage	18.264
	SRR8316904	Silver flowering stage	23.216
	SRR8316905	Silver flowering stage	10.151
	SRR8316906	Gold flowering stage	31.544
	SRR8316907	Gold flowering stage	35.830
	SRR8316908	Gold flowering stage	36.761
SRP132670	SRR6706286	Control	23.679
	SRR6706287	Light intensity 50%	22.704
	SRR6706288	Light intensity 20%	23.769
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	19.841
	CNS0095593	Slightly white alabastrum(diploid) 2	17.588
	CNS0095594	Slightly white alabastrum(diploid) 3	21.406
	CNS0095595	Whole white alabastrum(diploid) 2	14.532
	CNS0095596	Whole white alabastrum(diploid) 3	12.094
	CNS0095597	Whole white alabastrum(diploid) 4	14.500
	CNS0095598	Silvery flower (diploied) 1	23.340
	CNS0095599	Silvery flower (diploied) 2	17.411
	CNS0095600	Silvery flower (diploied) 3	35.189
	CNS0095601	Golden flower (diploid) 1	19.247
	CNS0095602	Golden flower (diploid) 2	35.187
	CNS0095603	Golden flower (diploid) 3	28.909
	CNS0095604	Slightly white alabastrum(tetraploid) 1	19.072
	CNS0095605	Slightly white alabastrum(tetraploid) 2	15.672
	CNS0095606	Slightly white alabastrum(tetraploid) 3	28.725
	CNS0095607	Whole white alabastrum(tetraploid) 1	13.583
	CNS0095608	Whole white alabastrum(tetraploid) 2	13.878
	CNS0095609	Whole white alabastrum(tetraploid) 3	21.899
	CNS0095610	Silvery flower (tetraploid) 1	35.577
	CNS0095611	Silvery flower (tetraploid) 2	33.803
	CNS0095612	Silvery flower (tetraploid) 3	22.822
	CNS0095613	Golden flower (tetraploid) 1	26.268
	CNS0095614	Golden flower (tetraploid) 2	34.437
	CNS0095615	Golden flower (tetraploid) 3	33.222
CRA001975	CRR073297	Stem 1	32.849
	CRR073298	Stem 2	24.569
	CRR073299	Stem 3	30.562
	CRR073300	Leaf 1	24.920
	CRR073301	Leaf 2	24.807
	CRR073302	Leaf 3	28.755
	CRR073303	Juvenile bud 1	29.145
	CRR073304	Juvenile bud 2	26.412
	CRR073305	Juvenile bud 3	41.962
	CRR073306	Third green 1	18.260
	CRR073307	Third green 2	19.487
	CRR073308	Third green 3	16.147
	CRR073309	Second white 1	13.559
	CRR073310	Second white 2	13.244
	CRR073311	Second white 3	9.716
	CRR073312	Silver flowering 1	12.448
	CRR073313	Silver flowering 2	12.808
	CRR073314	Silver flowering 3	15.763
	CRR073315	Gold flowering 1	13.283
	CRR073316	Gold flowering 2	23.164
	CRR073317	Gold flowering 3	14.224
	CRR073318	Tawny withering 1	22.619
	CRR073319	Tawny withering 2	17.039
	CRR073320	Tawny withering 3	25.276