Detail information of GWHGAAZE007062


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrEYU39898.11.34318E-91hypothetical protein MIMGU_mgv1a020125mg [Erythranthe guttata]
Swissprottr|Q9LH50|RAA4D_ARATH9E-92Ras-related protein RABA4d
trEMBLtr|A0A022RJH6|A0A022RJH6_ERYGU5E-92Uncharacterized protein {ECO:0000313|EMBL:EYU39898.1}
TAIR10AT3G12160.15E-73RAB GTPase homolog A4D

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene3736002837364450-
GWHAAZE00000002mRNA3736002837364450-
GWHAAZE00000002exon3736002837360223-
GWHAAZE00000002exon3736409437364450-
GWHAAZE00000002five_prime_UTR3736431837364450-
GWHAAZE00000002CDS3736409437364317-
GWHAAZE00000002CDS3736002837360223-
Transcript Sequence

Network for GWHGAAZE007062

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00071.23Ras161386.80E-48
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K07904RAB11A Endocytosis map04144
Pancreatic secretionmap04972
Vasopressin-regulated water reabsorptionmap04962
Endocrine and other factor-regulated calcium reabsorptionmap04961

Gene Ontology

GO term OntologyName
GO:0003924molecular_functionGTPase activity
GO:0005525molecular_functionGTP binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf6.301
SRR3591706second leaf0.836
SRR3591707mature leaf0.693
SRR3591708Shoot apex3.991
SRR3591709Stem2.974
SRR3591710White floral bud2.503
SRR3591711White flower1.051
SRR3591712Green floral bud11.890
SRR3591713Yellow flower0.662
SRP173429 SRR8316895Juvenile bud stage 6.608
SRR8316896Juvenile bud stage 14.320
SRR8316897Juvenile bud stage 5.485
SRR8316894Third green stage 3.491
SRR8316900Third green stage 13.357
SRR8316901Third green stage 11.039
SRR8316898Complete white stage 0.308
SRR8316899Complete white stage 0.368
SRR8316903Complete white stage 0.233
SRR8316902Silver flowering stage0.127
SRR8316904Silver flowering stage0.127
SRR8316905Silver flowering stage0.385
SRR8316906Gold flowering stage 0.097
SRR8316907Gold flowering stage 0.093
SRR8316908Gold flowering stage 0.091
SRP132670SRR6706286Control6.403
SRR6706287Light intensity 50%5.127
SRR6706288Light intensity 20%5.171
CNP0000432CNS0095592Slightly white alabastrum(diploid) 115.425
CNS0095593Slightly white alabastrum(diploid) 28.266
CNS0095594Slightly white alabastrum(diploid) 314.829
CNS0095595Whole white alabastrum(diploid) 29.744
CNS0095596Whole white alabastrum(diploid) 315.189
CNS0095597Whole white alabastrum(diploid) 48.984
CNS0095598Silvery flower (diploied) 10.001
CNS0095599Silvery flower (diploied) 20.077
CNS0095600Silvery flower (diploied) 30.227
CNS0095601Golden flower (diploid) 10.000
CNS0095602Golden flower (diploid) 20.239
CNS0095603Golden flower (diploid) 30.280
CNS0095604Slightly white alabastrum(tetraploid) 117.470
CNS0095605Slightly white alabastrum(tetraploid) 214.387
CNS0095606Slightly white alabastrum(tetraploid) 31.314
CNS0095607Whole white alabastrum(tetraploid) 116.872
CNS0095608Whole white alabastrum(tetraploid) 220.459
CNS0095609Whole white alabastrum(tetraploid) 310.306
CNS0095610Silvery flower (tetraploid) 10.485
CNS0095611Silvery flower (tetraploid) 20.291
CNS0095612Silvery flower (tetraploid) 31.237
CNS0095613Golden flower (tetraploid) 10.673
CNS0095614Golden flower (tetraploid) 20.823
CNS0095615Golden flower (tetraploid) 30.804
CRA001975CRR073297Stem 17.568
CRR073298Stem 26.319
CRR073299Stem 33.606
CRR073300Leaf 17.725
CRR073301Leaf 26.993
CRR073302Leaf 32.665
CRR073303Juvenile bud 16.309
CRR073304Juvenile bud 23.143
CRR073305Juvenile bud 30.737
CRR073306Third green 10.320
CRR073307Third green 20.289
CRR073308Third green 30.585
CRR073309Second white 10.494
CRR073310Second white 20.098
CRR073311Second white 30.000
CRR073312Silver flowering 10.747
CRR073313Silver flowering 21.261
CRR073314Silver flowering 30.726
CRR073315Gold flowering 10.934
CRR073316Gold flowering 20.943
CRR073317Gold flowering 30.102
CRR073318Tawny withering 11.411
CRR073319Tawny withering 20.885
CRR073320Tawny withering 31.870