Gene detail

Detail information of GWHGAAZE007036

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP10132.1	0	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q9SLA8\|FABI_ARATH	0	Enoyl-[acyl-carrier-protein] reductase [NADH], chloroplastic (Precursor)
trEMBL	tr\|A0A068UPA6\|A0A068UPA6_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_43 {ECO:0000313\|EMBL:CDP10132.1}
TAIR10	AT2G05990.2	5E-158	NAD(P)-binding Rossmann-fold superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	36726627	36736489	+
GWHAAZE00000002	mRNA	36726627	36736489	+
GWHAAZE00000002	exon	36726627	36726903	+
GWHAAZE00000002	exon	36727598	36727707	+
GWHAAZE00000002	exon	36728253	36728308	+
GWHAAZE00000002	exon	36728397	36728481	+
GWHAAZE00000002	exon	36728570	36728617	+
GWHAAZE00000002	exon	36732416	36732490	+
GWHAAZE00000002	exon	36732586	36732701	+
GWHAAZE00000002	exon	36733296	36733367	+
GWHAAZE00000002	exon	36733472	36733523	+
GWHAAZE00000002	exon	36734462	36734519	+
GWHAAZE00000002	exon	36734736	36734834	+
GWHAAZE00000002	exon	36736332	36736489	+
GWHAAZE00000002	CDS	36726627	36726903	+
GWHAAZE00000002	CDS	36727598	36727707	+
GWHAAZE00000002	CDS	36728253	36728308	+
GWHAAZE00000002	CDS	36728397	36728481	+
GWHAAZE00000002	CDS	36728570	36728617	+
GWHAAZE00000002	CDS	36732416	36732490	+
GWHAAZE00000002	CDS	36732586	36732701	+
GWHAAZE00000002	CDS	36733296	36733367	+
GWHAAZE00000002	CDS	36733472	36733523	+
GWHAAZE00000002	CDS	36734462	36734519	+
GWHAAZE00000002	CDS	36734736	36734834	+
GWHAAZE00000002	CDS	36736332	36736489	+

Transcript Sequence
>GWHTAAZE007044 ATGGCTGCAACTACCGCTTCTAGCATGCACATTGCTACAGTAAAACCATGTGCCTTTGCTTCCCAGAAAGGTTCAAAGTCAAGCATTGCAAATTTTGGTACAGACATTAAAGGGGCCTCTTGGACAAGCCTAAAGGGCTCTTTTCACATCTCATCGACACGACGATTCTCTCATAGTCTTACCTCCACTGCCGTAAAAGTTCAAAGGGTTATTACAAAAGCAATGTCTGAAAACAGTGAGATGAAGCCTCTCTCAGGATTGCCTATTGATTTGAGAGGTAAGAGGGCATTTATTGCTGGTATAGCTGATGATAACGGATATGGATGGGCAATAGCAAAATCCCTTGCTGCTGCAGGTGCTGAAATTCTCGTTGGTACATGGGTGCCAGCACTGAACATTTTTGAAACCAGTCTACGACGCGGGAAATTTGATGAATCACGCGTGTTGCCAGATGGTTCACTGATGGAAATCACAAAAGTGTACCCATTGGATGCAGTTTTTGACAGTCCAGAGGATGTTCCTGAAGATATAAAAGCAAATAAACGCTATGCAGGGTCCTCAAAGTGGACTGTTAAGGAAGTTGCTGAATCTGTTAAAGAAGATTTTGGCAGCATTGATATCCTTGTTCACTCACTTGCCAATGGACCGGAGGTCAGCAAACCACTGTTGGAGACATCCAGGAATGGATACCTTGCAGCCATCTCTGCATCAAGTTATTCCTTTGTTTCTTTACTCAAGCATTTCGTTCCAATAATGAATCCAGGCATCTTGGTGTTTATCTTTGCAGGTGGTGCTACAATTTCTCTAACCTACATTGCTTCTGAAAGGATCATACCAGGATATGGTGGAGGCATGAGTTCAGCAAAGGCTGCTTTGGAGAGTGACACCAAAGTACTGGCTTTTGAAGCTGGAAGAAAACACAAAATCAGAGTTAACACAATATCTGCAGGCCCGTTAAGAAGTCGCGCAGCAAAAGCTATTGGTTTCATTGATATGATGATTGACTACTCCTCGGAGAATGCACCCTTGCAGAAAGAGTTATCCGCTGAGGAGGTTGGCAATGCAGCTGCTTTTCTCGCATCACCTTTGGCCTCGGCTATCACTGGTGCTGTCCTGTACGTCGACAATGGACTGAACGCAATGGGAGTTGGAGTTGACAGCCCTATTTTTGCAGATCTCGACATTCCAAAAGCCAACAAGAGCTAA

Network for GWHGAAZE007036

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13561.7	adh_short_C2	190	379	2.90E-48

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00208	fabI	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Fatty acid metabolism	map01212
		Fatty acid biosynthesis	map00061
		Biotin metabolism	map00780
		Prodigiosin biosynthesis	map00333

Gene Ontology

GO term	Ontology	Name
GO:0006633	biological_process	fatty acid biosynthetic process
GO:0055114	biological_process	oxidation-reduction process
GO:0004318	molecular_function	enoyl-[acyl-carrier-protein] reductase (NADH) activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	51.844
	SRR3591706	second leaf	53.925
	SRR3591707	mature leaf	6.891
	SRR3591708	Shoot apex	81.947
	SRR3591709	Stem	17.567
	SRR3591710	White floral bud	16.081
	SRR3591711	White flower	19.656
	SRR3591712	Green floral bud	42.743
	SRR3591713	Yellow flower	13.047
SRP173429	SRR8316895	Juvenile bud stage	47.188
	SRR8316896	Juvenile bud stage	58.141
	SRR8316897	Juvenile bud stage	31.828
	SRR8316894	Third green stage	20.925
	SRR8316900	Third green stage	51.171
	SRR8316901	Third green stage	47.129
	SRR8316898	Complete white stage	6.128
	SRR8316899	Complete white stage	28.238
	SRR8316903	Complete white stage	10.094
	SRR8316902	Silver flowering stage	5.377
	SRR8316904	Silver flowering stage	8.666
	SRR8316905	Silver flowering stage	2.462
	SRR8316906	Gold flowering stage	7.929
	SRR8316907	Gold flowering stage	7.377
	SRR8316908	Gold flowering stage	11.107
SRP132670	SRR6706286	Control	24.701
	SRR6706287	Light intensity 50%	28.642
	SRR6706288	Light intensity 20%	33.717
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	55.229
	CNS0095593	Slightly white alabastrum(diploid) 2	54.282
	CNS0095594	Slightly white alabastrum(diploid) 3	45.727
	CNS0095595	Whole white alabastrum(diploid) 2	32.147
	CNS0095596	Whole white alabastrum(diploid) 3	34.074
	CNS0095597	Whole white alabastrum(diploid) 4	21.937
	CNS0095598	Silvery flower (diploied) 1	30.784
	CNS0095599	Silvery flower (diploied) 2	31.577
	CNS0095600	Silvery flower (diploied) 3	21.774
	CNS0095601	Golden flower (diploid) 1	16.916
	CNS0095602	Golden flower (diploid) 2	22.515
	CNS0095603	Golden flower (diploid) 3	19.173
	CNS0095604	Slightly white alabastrum(tetraploid) 1	55.371
	CNS0095605	Slightly white alabastrum(tetraploid) 2	51.805
	CNS0095606	Slightly white alabastrum(tetraploid) 3	76.405
	CNS0095607	Whole white alabastrum(tetraploid) 1	15.566
	CNS0095608	Whole white alabastrum(tetraploid) 2	16.216
	CNS0095609	Whole white alabastrum(tetraploid) 3	46.024
	CNS0095610	Silvery flower (tetraploid) 1	18.042
	CNS0095611	Silvery flower (tetraploid) 2	16.879
	CNS0095612	Silvery flower (tetraploid) 3	11.759
	CNS0095613	Golden flower (tetraploid) 1	8.766
	CNS0095614	Golden flower (tetraploid) 2	15.751
	CNS0095615	Golden flower (tetraploid) 3	3.668
CRA001975	CRR073297	Stem 1	75.355
	CRR073298	Stem 2	64.594
	CRR073299	Stem 3	82.872
	CRR073300	Leaf 1	40.576
	CRR073301	Leaf 2	43.163
	CRR073302	Leaf 3	66.290
	CRR073303	Juvenile bud 1	45.262
	CRR073304	Juvenile bud 2	29.186
	CRR073305	Juvenile bud 3	39.240
	CRR073306	Third green 1	2.979
	CRR073307	Third green 2	3.215
	CRR073308	Third green 3	6.094
	CRR073309	Second white 1	5.284
	CRR073310	Second white 2	3.321
	CRR073311	Second white 3	1.793
	CRR073312	Silver flowering 1	5.003
	CRR073313	Silver flowering 2	5.106
	CRR073314	Silver flowering 3	5.661
	CRR073315	Gold flowering 1	18.620
	CRR073316	Gold flowering 2	21.483
	CRR073317	Gold flowering 3	16.924
	CRR073318	Tawny withering 1	50.645
	CRR073319	Tawny withering 2	32.236
	CRR073320	Tawny withering 3	57.306