Gene detail

Detail information of GWHGAAZE006859

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011096883.1	0	PREDICTED: tetrahydrocannabinolic acid synthase-like [Sesamum indicum]
Swissprot	tr\|Q9SVG4\|RETOL_ARATH	4E-139	Reticuline oxidase-like protein (Precursor)
trEMBL	tr\|A0A059CBS7\|A0A059CBS7_EUCGR	0	Uncharacterized protein {ECO:0000313\|EMBL:KCW75704.1}
TAIR10	AT1G30760.1	8E-130	FAD-binding Berberine family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	33150036	33161534	-
GWHAAZE00000002	mRNA	33150036	33161534	-
GWHAAZE00000002	exon	33160314	33161534	-
GWHAAZE00000002	exon	33150036	33151181	-
GWHAAZE00000002	CDS	33160314	33161534	-
GWHAAZE00000002	CDS	33150036	33151181	-

Transcript Sequence
>GWHTAAZE006867 ATGTTCAATATCCGCTCCATCGATGTTAACATAGAGAAAGAGACCGCTTGGGTCGAAGCCGGGGCCACTTTAGGCGAACTTTACTACAACATATGGGAAAAAAGCGAATTCCATGGTTTTCCGGCTGGAATTTGTCCAACCGTAGGGGTGGGTGGGCATTTTAGTGGAGGTGGATATGGTAATATGCTGCGTAAACACGGCCTAGCTGTGGACCATATAATCGATGCAAAAATCGTTGACGCAAATGGTCGAAAACTTGATAGGCACGCTATGGGTGAGGATCTTTTCTGGGCAATTAGAGGTGGTGGTGGTGCTAGTTTCGGTGTAATTCTATCATACACTATAAAACTAGTCCGAGTACCCGAAATCGTCACAGTTTTTCAGACAATCAAGACACTAGAACAGAATGCTACTGATATTGTTCACAAGTGGCAATACGTAGCGAATACAATGGATCATGGACTCTTCATAAGGATTGAACTTACACCAACTGGACATACAAACACAACCAAAACAATCACTGCAACTTTCACAGCATTATTTCTAGGTGACTCCAACAGATTGATGTTAATCATGGACAAAGATTTTCCTGAATTGGGCCTAAAGAAAAAAGATTGCAAGGAAATGAGCTGGATAGAATCAGTACTTTTCTGGGCAAATTACGGTCCACAGACACCGGTAAATGTTATTCTTTCACGTGATTATTCTTCAGGTTTCTTCAAAAGAAAATCGGATTACGTCCAAAAACCCATTTCCAAACAAGGGCTAAATCAAATTTGGAAGAAAATGCTGGAATTGAGAAGACCCGGACTTGTTTTCAACCCCTACGGGGGCAAAATGAGTGAAATTCCACAGAGGGAAACTCCATTTCCTCACAGAAAGGGGAATTTGTACAAAGTACATTACTCTGCAAATTGGGGTGACGATGAAGGAATTGAAGCTGAGGGAATTCATTTTGATCAAATTAGGAAACTGTACAAATTTATGACCCCTTTTGTGTCAAAGAAACCTAGAGGGGCATTTTTGAATTATAGGGATCTTGATATTGGGGCTAATGATCATAATGGGAAAAATAGTTATAAAAAGGGCAGGGTTTATGGGGCTAAGTATTTCAAGAAGAATTTTCATAGGTTGGTTAGAGTGAAGACAATGGTGGATCCTGAGAATTTCTTTAGGAATGAACAGAGTATTCCTGTTCTACCTCATTATGGGGGGCATAAGGGGCTACTACTAGTGAAGTGTACTACAAAATTGCAGAGGAGCAAAATCCATGGCTACCCAGCCGGGCTTTGTATGACTTTAGGCATTGGTGGGCATATTACAGGTGGTTCCTATGGTCCATTGATGACAAAGTACGGGCTTGGTGCTGACAATGTGATCGATGCTAAAATAATCGACAATGATGGTAAGATTCTGGATAGAAAATCGATGGGTGAAGATCTATTTTGGGCTATTAGAGGGGGAGGAGGTGCTAGTTTCGGAGTCATACTTTCTTGGAAGATTAAACTTGTTCCTGTTCCAGAAACTGTGATAGTTTTCACATTTCCCAAGACATTGGAAGAGGGAGCAACCAAAATTCTCTACAGGTGGCAACAAGTTGCTGATAAAATCGACGAAGATCTCTTCATCAGAGTCTTCATAACCGTAGTAAATGCAACCCAACCAGGTAAACAAACTATAAAAACTGCTTATAATGCATTGGTCCTGGGTGGAGCTGATAGGCTTATTCAAGTAATGAATAAGAGTTTTCCTGAATTGGGTGTAGAGAAAGAAAATTGTAGTGAAATGAGCTGGATCGAGTCAATGGTTTACATCGGGGGCTACCCATCGGGTACTCCCCCTGAAATTTTACTTCAAGTGGGGTCATTAACGAAAGTGTATTTTAAAGCGAAGTCTGATTTTGTGAAAGAGGTAATCCCTAAAAAAGGTCTTGAAGGGCTATGGAAAAGGTTTTTAAAAGAGGACTTGCCTTTGTCTGTATGGAATCCATATGGAGGAATGATGAGTAAGATTCCAGAGTCAGCAACTCCATTTCCACATAGAAAAAGGACTTTATTTAAAATACAATATTTGACTGGTTGGCTAGATGGAAACATTGATACGCAAGAAAAACACTATCGTTGGATTAGGAAGATGTACAAGTACATGGGTAAATATGTTTCTAAGTTTCCAAGAGAGGCGTATGTGAATTATAGGGATCTTGATTTGGGGATGAATAAGAACAAGAATGTGAGTTTCGAAGAGGCGACTTCTTGGGGTTATAAGTATTTCAAGAATAATTTTAAGAGATTGGCAATAGTTAAGACTAGGGTGGATCCAGATAATTTTTTCTGGCATGAACAGAGCATACCCACTCTTAAAAATTAG

Network for GWHGAAZE006859

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01565.24	FAD_binding_4	6	84	1.30E-13
PF08031.13	BBE	340	398	1.10E-21
PF01565.24	FAD_binding_4	427	472	2.30E-06
PF08031.13	BBE	727	784	6.80E-21

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K22395	K22395	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Phenylpropanoid biosynthesis	map00940

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0016491	molecular_function	oxidoreductase activity
GO:0050660	molecular_function	flavin adenine dinucleotide binding
GO:0071949	molecular_function	FAD binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	0.534
	SRR3591711	White flower	0.341
	SRR3591712	Green floral bud	0.021
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.013
	SRR8316896	Juvenile bud stage	0.038
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.047
	SRR8316900	Third green stage	0.000
	SRR8316901	Third green stage	0.021
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.177
	SRR8316903	Complete white stage	0.159
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.043
SRP132670	SRR6706286	Control	0.005
	SRR6706287	Light intensity 50%	0.026
	SRR6706288	Light intensity 20%	0.018
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.011
	CNS0095593	Slightly white alabastrum(diploid) 2	0.000
	CNS0095594	Slightly white alabastrum(diploid) 3	0.018
	CNS0095595	Whole white alabastrum(diploid) 2	0.000
	CNS0095596	Whole white alabastrum(diploid) 3	0.035
	CNS0095597	Whole white alabastrum(diploid) 4	0.029
	CNS0095598	Silvery flower (diploied) 1	0.000
	CNS0095599	Silvery flower (diploied) 2	0.253
	CNS0095600	Silvery flower (diploied) 3	0.203
	CNS0095601	Golden flower (diploid) 1	0.051
	CNS0095602	Golden flower (diploid) 2	0.228
	CNS0095603	Golden flower (diploid) 3	0.295
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.000
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.000
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.000
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.232
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.009
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.000
	CNS0095610	Silvery flower (tetraploid) 1	0.011
	CNS0095611	Silvery flower (tetraploid) 2	0.158
	CNS0095612	Silvery flower (tetraploid) 3	0.000
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.007
CRA001975	CRR073297	Stem 1	0.000
	CRR073298	Stem 2	0.000
	CRR073299	Stem 3	0.000
	CRR073300	Leaf 1	0.000
	CRR073301	Leaf 2	0.000
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.054
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.024
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.054
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.023
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.019
	CRR073320	Tawny withering 3	0.000