Gene detail

Detail information of GWHGAAZE006806

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010245171.1	0	PREDICTED: tyrosine/DOPA decarboxylase 2-like [Nelumbo nucifera]
Swissprot	tr\|P54768\|TYDC1_PAPSO	0	Tyrosine decarboxylase
trEMBL	tr\|Q9AXN7\|Q9AXN7_THLFG	0	Tyrosine/dopa decarboxylase {ECO:0000313\|EMBL:AAG60665.1}
TAIR10	AT4G28680.1	2E-148	L-tyrosine decarboxylase

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	32380432	32381907	+
GWHAAZE00000002	mRNA	32380432	32381907	+
GWHAAZE00000002	exon	32380432	32381004	+
GWHAAZE00000002	exon	32381146	32381907	+
GWHAAZE00000002	CDS	32380432	32381004	+
GWHAAZE00000002	CDS	32381146	32381907	+

Transcript Sequence
>GWHTAAZE006814 ATGAACCCACTTGACCCACAAGAATTAAGGAGGCAAGGCCATATTCTAGTAGACTTTATAGCTGATTATTACCAAAATATCGAAAAATATCCAGTCCTGAGCCAAGTACAACCCGGTTACCTCCGGCAGCTCTTGCCGGACTCAGCTCCGGTCAAACCCGAGTCCATAGAAAAAATTCTCCAAGACTTACAAACTGACATTATGCCAGGCTTAACTCATTGGCAAAGCCCTAATTTCTTCGCGTATTTTCAGTCAAACGGAAGCGTTGCTAATTTCCTAGGTGAAATGTTGTGCACGGGTTTCAATGTCGTCGGGTTTAATTGGGTTTCTTCACCGGCTGCCACTGAGCTAGAGGGCATAGTCATGGATTGGTTGGCTAAATTGCTTGAGCTACCAAATTTTTACCAATTTGGTGATGGTGGTGGTGGTGTCATACATGGGTCCACTTGTGAGGCATTTGTGTGTACACTAACTGCTGCTAGAGAAAAAATGTTGAACAAAATTGGTAGGGAAAATATAGGGAAGCTTGTTGTATACGCTTCTGATCAAACACATTTCTCTCTCCAAAAAGCGGCAACTATTGGTACCACCTCGTCAGCAGCAGTAGACCCATTGGGCCCGCTCTGCAAGGTGGCAAAAATGTACAAAATGTGGGTCCATATTGATGCGGCTTACGCCGGCAGTGCTTGTATTTGCCCGGAGTTTCGCCACTTTCTTGATGGGGTCGAGGCCGCTAATTCGTTTAGTCTAAACGCGCATAAATGGTTTTTAACCACTCTCGATTGTTGTTGCTTATGGGTAAATGACCCAAGCATACTTATCGAGGCGCTCTCCACGGATCCTGAGCTCTTGTCGAATGAAGCAACTGAGTCAAAGCGAGTGGTTGACTACAAGGACTGGCAGATAGCTCTGAGCCGTCGATTTCGAGCAATAAAGCTGTGGCTAGTTTTTCGGAGCTACGGCGTGGATAACATTCGGGATTTCATTAGAGAGCATGTGAAAATGGCTAAGTATTTTGAAGGGCTTGTGGCGATGGACAAGAGGTTTGAGGTGGTTGTGCGTAGGAATTTTGCTATGGTCTGTCTTCGGATTTCGCCTTTTGCGATTTCTAACAGTGGAACCGTAGGTGAGGAACATGTGAATGAGCTGAACAAGAAATTGATGGAGTCAGTTAACGGGTCTGGTCGGGTTTATGTGACCCATGCAGTGTTGGGAGGTATGTATGTGATCCGGTTCGCTGTTGGGGCAACCCTTACAGAGTTTCGGCATGTTAGTGTAGCTTGGAAGGTGATACAAGAGCATGCTAATTCACTTCTTGGTACACTTACCTTCTAA

Network for GWHGAAZE006806

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00282.20	Pyridoxal_deC	191	364	7.80E-55

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01593	DDC, TDC	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Tyrosine metabolism	map00350
		Phenylalanine metabolism	map00360
		Tryptophan metabolism	map00380
		Indole alkaloid biosynthesis	map00901
		Isoquinoline alkaloid biosynthesis	map00950
		Betalain biosynthesis	map00965
		Dopaminergic synapse	map04728
		Serotonergic synapse	map04726
		Axon regeneration	map04361

Gene Ontology

GO term	Ontology	Name
GO:0006520	biological_process	cellular amino acid metabolic process
GO:0019752	biological_process	carboxylic acid metabolic process
GO:0003824	molecular_function	catalytic activity
GO:0016831	molecular_function	carboxy-lyase activity
GO:0030170	molecular_function	pyridoxal phosphate binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	7.886
	SRR3591706	second leaf	15.468
	SRR3591707	mature leaf	0.847
	SRR3591708	Shoot apex	16.093
	SRR3591709	Stem	0.560
	SRR3591710	White floral bud	6.629
	SRR3591711	White flower	2.624
	SRR3591712	Green floral bud	19.687
	SRR3591713	Yellow flower	0.255
SRP173429	SRR8316895	Juvenile bud stage	6.844
	SRR8316896	Juvenile bud stage	3.269
	SRR8316897	Juvenile bud stage	3.042
	SRR8316894	Third green stage	5.148
	SRR8316900	Third green stage	8.775
	SRR8316901	Third green stage	10.289
	SRR8316898	Complete white stage	3.437
	SRR8316899	Complete white stage	18.640
	SRR8316903	Complete white stage	5.871
	SRR8316902	Silver flowering stage	1.439
	SRR8316904	Silver flowering stage	3.092
	SRR8316905	Silver flowering stage	0.178
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.573
SRP132670	SRR6706286	Control	11.486
	SRR6706287	Light intensity 50%	11.769
	SRR6706288	Light intensity 20%	10.213
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	15.648
	CNS0095593	Slightly white alabastrum(diploid) 2	11.038
	CNS0095594	Slightly white alabastrum(diploid) 3	10.671
	CNS0095595	Whole white alabastrum(diploid) 2	8.153
	CNS0095596	Whole white alabastrum(diploid) 3	11.783
	CNS0095597	Whole white alabastrum(diploid) 4	5.911
	CNS0095598	Silvery flower (diploied) 1	2.084
	CNS0095599	Silvery flower (diploied) 2	2.560
	CNS0095600	Silvery flower (diploied) 3	1.557
	CNS0095601	Golden flower (diploid) 1	0.576
	CNS0095602	Golden flower (diploid) 2	0.233
	CNS0095603	Golden flower (diploid) 3	0.544
	CNS0095604	Slightly white alabastrum(tetraploid) 1	11.325
	CNS0095605	Slightly white alabastrum(tetraploid) 2	10.976
	CNS0095606	Slightly white alabastrum(tetraploid) 3	27.473
	CNS0095607	Whole white alabastrum(tetraploid) 1	9.416
	CNS0095608	Whole white alabastrum(tetraploid) 2	4.671
	CNS0095609	Whole white alabastrum(tetraploid) 3	3.171
	CNS0095610	Silvery flower (tetraploid) 1	0.659
	CNS0095611	Silvery flower (tetraploid) 2	1.105
	CNS0095612	Silvery flower (tetraploid) 3	0.617
	CNS0095613	Golden flower (tetraploid) 1	0.347
	CNS0095614	Golden flower (tetraploid) 2	1.386
	CNS0095615	Golden flower (tetraploid) 3	3.046
CRA001975	CRR073297	Stem 1	20.353
	CRR073298	Stem 2	17.395
	CRR073299	Stem 3	18.826
	CRR073300	Leaf 1	12.618
	CRR073301	Leaf 2	13.730
	CRR073302	Leaf 3	10.388
	CRR073303	Juvenile bud 1	16.799
	CRR073304	Juvenile bud 2	13.228
	CRR073305	Juvenile bud 3	21.174
	CRR073306	Third green 1	1.964
	CRR073307	Third green 2	5.128
	CRR073308	Third green 3	9.264
	CRR073309	Second white 1	0.151
	CRR073310	Second white 2	0.273
	CRR073311	Second white 3	0.030
	CRR073312	Silver flowering 1	0.036
	CRR073313	Silver flowering 2	0.015
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.309
	CRR073316	Gold flowering 2	0.123
	CRR073317	Gold flowering 3	1.039
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.000