Detail information of GWHGAAZE006752


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDP14560.10unnamed protein product [Coffea canephora]
Swissprottr|Q9SYM4|TPS1_ARATH0Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1
trEMBLtr|A0A068V194|A0A068V194_COFCA0Coffea canephora DH200=94 genomic scaffold, scaffold_87 {ECO:0000313|EMBL:CDP14560.1}
TAIR10AT1G78580.10trehalose-6-phosphate synthase

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene3131179331321925-
GWHAAZE00000002mRNA3131179331321925-
GWHAAZE00000002exon3132187531321925-
GWHAAZE00000002exon3132069131321027-
GWHAAZE00000002exon3132028531320382-
GWHAAZE00000002exon3131974931320137-
GWHAAZE00000002exon3131919531319309-
GWHAAZE00000002exon3131899831319099-
GWHAAZE00000002exon3131874431318894-
GWHAAZE00000002exon3131793131318019-
GWHAAZE00000002exon3131777131317819-
GWHAAZE00000002exon3131704331317143-
GWHAAZE00000002exon3131633231316519-
GWHAAZE00000002exon3131563931315756-
GWHAAZE00000002exon3131407531314251-
GWHAAZE00000002exon3131386531313987-
GWHAAZE00000002exon3131328131313368-
GWHAAZE00000002exon3131302931313159-
GWHAAZE00000002exon3131283931312937-
GWHAAZE00000002exon3131179331312188-
GWHAAZE00000002CDS3132187531321925-
GWHAAZE00000002CDS3132069131321027-
GWHAAZE00000002CDS3132028531320382-
GWHAAZE00000002CDS3131974931320137-
GWHAAZE00000002CDS3131919531319309-
GWHAAZE00000002CDS3131899831319099-
GWHAAZE00000002CDS3131874431318894-
GWHAAZE00000002CDS3131793131318019-
GWHAAZE00000002CDS3131777131317819-
GWHAAZE00000002CDS3131704331317143-
GWHAAZE00000002CDS3131633231316519-
GWHAAZE00000002CDS3131563931315756-
GWHAAZE00000002CDS3131407531314251-
GWHAAZE00000002CDS3131386531313987-
GWHAAZE00000002CDS3131328131313368-
GWHAAZE00000002CDS3131302931313159-
GWHAAZE00000002CDS3131283931312937-
GWHAAZE00000002CDS3131179331312188-
Transcript Sequence

Network for GWHGAAZE006752

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00982.22Glyco_transf_201275605.90E-181
PF02358.17Trehalose_PPase6078134.60E-57
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K16055TPS Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Starch and sucrose metabolismmap00500

Gene Ontology

GO term OntologyName
GO:0005992biological_processtrehalose biosynthetic process
GO:0003824molecular_functioncatalytic activity
GO:0003825molecular_functionalpha,alpha-trehalose-phosphate synthase (UDP-forming) activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf2.686
SRR3591706second leaf7.950
SRR3591707mature leaf10.075
SRR3591708Shoot apex9.924
SRR3591709Stem1.113
SRR3591710White floral bud48.163
SRR3591711White flower25.592
SRR3591712Green floral bud19.850
SRR3591713Yellow flower12.101
SRP173429 SRR8316895Juvenile bud stage 10.961
SRR8316896Juvenile bud stage 19.532
SRR8316897Juvenile bud stage 8.300
SRR8316894Third green stage 6.684
SRR8316900Third green stage 19.869
SRR8316901Third green stage 17.730
SRR8316898Complete white stage 8.155
SRR8316899Complete white stage 6.268
SRR8316903Complete white stage 13.557
SRR8316902Silver flowering stage12.764
SRR8316904Silver flowering stage24.028
SRR8316905Silver flowering stage12.127
SRR8316906Gold flowering stage 19.871
SRR8316907Gold flowering stage 24.171
SRR8316908Gold flowering stage 25.543
SRP132670SRR6706286Control12.096
SRR6706287Light intensity 50%11.666
SRR6706288Light intensity 20%12.178
CNP0000432CNS0095592Slightly white alabastrum(diploid) 115.753
CNS0095593Slightly white alabastrum(diploid) 212.240
CNS0095594Slightly white alabastrum(diploid) 318.278
CNS0095595Whole white alabastrum(diploid) 218.112
CNS0095596Whole white alabastrum(diploid) 324.212
CNS0095597Whole white alabastrum(diploid) 419.270
CNS0095598Silvery flower (diploied) 18.640
CNS0095599Silvery flower (diploied) 28.326
CNS0095600Silvery flower (diploied) 325.471
CNS0095601Golden flower (diploid) 17.106
CNS0095602Golden flower (diploid) 214.007
CNS0095603Golden flower (diploid) 314.318
CNS0095604Slightly white alabastrum(tetraploid) 121.722
CNS0095605Slightly white alabastrum(tetraploid) 218.724
CNS0095606Slightly white alabastrum(tetraploid) 311.547
CNS0095607Whole white alabastrum(tetraploid) 123.481
CNS0095608Whole white alabastrum(tetraploid) 223.633
CNS0095609Whole white alabastrum(tetraploid) 332.343
CNS0095610Silvery flower (tetraploid) 121.145
CNS0095611Silvery flower (tetraploid) 238.820
CNS0095612Silvery flower (tetraploid) 376.472
CNS0095613Golden flower (tetraploid) 118.267
CNS0095614Golden flower (tetraploid) 222.379
CNS0095615Golden flower (tetraploid) 318.390
CRA001975CRR073297Stem 120.878
CRR073298Stem 217.143
CRR073299Stem 317.083
CRR073300Leaf 114.862
CRR073301Leaf 213.672
CRR073302Leaf 39.518
CRR073303Juvenile bud 19.295
CRR073304Juvenile bud 25.568
CRR073305Juvenile bud 37.376
CRR073306Third green 133.338
CRR073307Third green 223.295
CRR073308Third green 331.044
CRR073309Second white 134.551
CRR073310Second white 242.129
CRR073311Second white 345.533
CRR073312Silver flowering 133.349
CRR073313Silver flowering 230.520
CRR073314Silver flowering 327.883
CRR073315Gold flowering 122.997
CRR073316Gold flowering 242.419
CRR073317Gold flowering 322.121
CRR073318Tawny withering 12.657
CRR073319Tawny withering 22.985
CRR073320Tawny withering 31.814