Gene detail

Detail information of GWHGAAZE006715

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006467481.1	0	PREDICTED: phospho-N-acetylmuramoyl-pentapeptide-transferase homolog isoform X2 [Citrus sinensis]
Swissprot	tr\|O49730\|MRAY_ARATH	2E-140	Phospho-N-acetylmuramoyl-pentapeptide-transferase homolog
trEMBL	tr\|A0A067GEV9\|A0A067GEV9_CITSI	0	Uncharacterized protein {ECO:0000313\|EMBL:KDO78154.1}
TAIR10	AT4G18270.1	5E-90	translocase 11

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	30676758	30685392	-
GWHAAZE00000002	mRNA	30676758	30685392	-
GWHAAZE00000002	exon	30676758	30677083	-
GWHAAZE00000002	exon	30678458	30678666	-
GWHAAZE00000002	exon	30679794	30679987	-
GWHAAZE00000002	exon	30681512	30681576	-
GWHAAZE00000002	exon	30681983	30682491	-
GWHAAZE00000002	exon	30682770	30682836	-
GWHAAZE00000002	exon	30683262	30683504	-
GWHAAZE00000002	exon	30684696	30684757	-
GWHAAZE00000002	exon	30685251	30685392	-
GWHAAZE00000002	CDS	30685251	30685392	-
GWHAAZE00000002	CDS	30684696	30684757	-
GWHAAZE00000002	CDS	30683262	30683504	-
GWHAAZE00000002	CDS	30682770	30682836	-
GWHAAZE00000002	CDS	30681983	30682491	-
GWHAAZE00000002	CDS	30681512	30681576	-
GWHAAZE00000002	CDS	30679794	30679987	-
GWHAAZE00000002	CDS	30678458	30678666	-
GWHAAZE00000002	CDS	30676901	30677083	-
GWHAAZE00000002	three_prime_UTR	30676758	30676900	-

Transcript Sequence
>GWHTAAZE006723 ATGGCACGTGGAGAGGATAGGCCTGTACAACGTAGGGAGTTTCAGAGGCGCGTGATGTTACAAGTACTTTCGTGGCTTAGACGTCTCGTTAATTCCCAAGTGAGGCAGTTCGCCTTCGTCACTTCCTCTATCTCTATATATGGTGTTAGAAAATATGGATGTTGTTCGCGGCGTAGGATTCTTCATGTTACAGCCATGGACGAGGATTCAGTGGCAAGTTATTCACTTGATGACTGGATAGACAATGAGGAGGCAGTTGAATACATGTATTCATCGAGTGAAGGTGAAGAAAGTGATGGAGAAATGATGTTAAATCCAATAACCGATGTTGATTTGCCTAGTGTTAGAGAAAAGATTCGTCATAATGATGATGCATTAACTGTGACAGCCTATCGGTTTGCAATGATGGGGAGAGCTCGCAAGAAAAGCAGGCAAGAACACTTCCATGTTGATTGTGGTTCTCATAAATTTCAAATGGTTTTTGCTAGAAAAATGCAGTTCTCACTAATAAAGGGACTTTCACGTAAAGGTTTGCCTGCTGACTTGGTTCTTTTGGAATATTCTGATTATAGGATTAAATACGGAAGTTTCCTCAACTTGGGTCTAATGACATTTTCCACCTTGCTTCTTTTACTTGTGGACTTGTGCGCTTGGCGAATTGTCAGATTACCCTTATCACCATTTCACTTGATGCTCCCCTTTTCTACATCTGCGGTTTTAGCCTCTTGTGCAGGCTACATTGGCGTCCCCTTACTCCGTAGATTGAAGATGATATCATTCATCAGGAAAGAAGGGCCTGCTAGGCACTCTTTTAAGAAGGGTACCCCCACAATGGGAGGACTGTTTTTCATACCAATTGGTATAATTGTTGCTGAATTCATGGTCGGTTTTTCTTCTATTGAAGTTTCTGGAGCAGCTATTGCAACTCTAGTATTTGCTGCAATTGGGCTACTTGACGACTCTTTAAGTCTCATCAATAATAATAAAAATGGTTTATCTGCTTGGATGAGAATATTGTTGGAGGTAGCTGTTGGGGCTTGGTTCTGTTTTTGGCTGGTTACGACAAATATATCATCACCCTACAGCATAAAAATGGTGGTGCCTCTACCCCTCCCTGTGGGACTAGTTTGCCTGGGAAATGGTTACCTGTTTTTGACTTCATTCTGCTTCGTTTCCATGGCAAATGGGATTAATTTGACAGATGGCCTAGATGGATTGGCTGGAGGAACTGCTGCGTTGGCTTTTATCGGAATGTCAATTGCAGTGCTTCCAATATGTTCTGATCTTGCTGTGTTTGGAGCATCAATGGCAGGATGCTGTGTGGGTTTTCTTTCACATAATAGATACAAGGCTTCTGTATTTATGGGGGATACGGGATCCTTGGCCTTGGGTGGAGCCCTAGCCGCAATGGCTGCTTGTACCGGAATGTTCTTTCCTTTGTTCATCTCATCTGGAATCTTTGTCCTCGAAGCATTATCGGTTACAATGCAGGTATCCTTCTTCAGGACCACCAAATACTTGGGTGGAAGAGGCCGCCGCTTGTTCAGAATGGCGCCCATTCACCACCACCTCGAACTATGCGGAGTCAAAGAACCCATCATTGTTGCAGGAGCTTATATCATTTCTTCAATTCTTATTTTATGTGCTGGATATATTGCTCTCATTTCAGCATAACCTTGAAGCAATTTTACGTCATCCGTTAGTCTAATGTTTTTTTTTCTTAAATTATTTCTGAATTTTGTATTTTTTTTTCTAGAAGTTTTCGGTTTTCTTCTGACACGGAACTTTTTAGAGTAATACAATTCTTTTATACACAA

Network for GWHGAAZE006715

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF10555.10	MraY_sig1	272	284	3.70E-05
PF00953.22	Glycos_transf_4	304	472	4.00E-27

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01000	mraY	Metabolic pathways	map01100
K01000	mraY	Peptidoglycan biosynthesis	map00550

Gene Ontology

GO term	Ontology	Name
GO:0016020	cellular_component	membrane
GO:0016021	cellular_component	integral component of membrane
GO:0008963	molecular_function	phospho-N-acetylmuramoyl-pentapeptide-transferase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	14.071
	SRR3591706	second leaf	15.847
	SRR3591707	mature leaf	9.637
	SRR3591708	Shoot apex	15.842
	SRR3591709	Stem	17.201
	SRR3591710	White floral bud	15.474
	SRR3591711	White flower	14.281
	SRR3591712	Green floral bud	14.515
	SRR3591713	Yellow flower	17.616
SRP173429	SRR8316895	Juvenile bud stage	13.859
	SRR8316896	Juvenile bud stage	22.723
	SRR8316897	Juvenile bud stage	14.146
	SRR8316894	Third green stage	6.228
	SRR8316900	Third green stage	10.872
	SRR8316901	Third green stage	14.706
	SRR8316898	Complete white stage	11.356
	SRR8316899	Complete white stage	19.332
	SRR8316903	Complete white stage	18.573
	SRR8316902	Silver flowering stage	6.948
	SRR8316904	Silver flowering stage	7.852
	SRR8316905	Silver flowering stage	3.519
	SRR8316906	Gold flowering stage	9.830
	SRR8316907	Gold flowering stage	14.864
	SRR8316908	Gold flowering stage	11.910
SRP132670	SRR6706286	Control	6.446
	SRR6706287	Light intensity 50%	7.807
	SRR6706288	Light intensity 20%	8.215
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	17.803
	CNS0095593	Slightly white alabastrum(diploid) 2	14.537
	CNS0095594	Slightly white alabastrum(diploid) 3	16.074
	CNS0095595	Whole white alabastrum(diploid) 2	10.305
	CNS0095596	Whole white alabastrum(diploid) 3	8.795
	CNS0095597	Whole white alabastrum(diploid) 4	8.777
	CNS0095598	Silvery flower (diploied) 1	12.135
	CNS0095599	Silvery flower (diploied) 2	16.284
	CNS0095600	Silvery flower (diploied) 3	12.496
	CNS0095601	Golden flower (diploid) 1	12.562
	CNS0095602	Golden flower (diploid) 2	12.622
	CNS0095603	Golden flower (diploid) 3	11.243
	CNS0095604	Slightly white alabastrum(tetraploid) 1	13.188
	CNS0095605	Slightly white alabastrum(tetraploid) 2	10.793
	CNS0095606	Slightly white alabastrum(tetraploid) 3	11.610
	CNS0095607	Whole white alabastrum(tetraploid) 1	7.097
	CNS0095608	Whole white alabastrum(tetraploid) 2	5.518
	CNS0095609	Whole white alabastrum(tetraploid) 3	7.743
	CNS0095610	Silvery flower (tetraploid) 1	19.938
	CNS0095611	Silvery flower (tetraploid) 2	13.637
	CNS0095612	Silvery flower (tetraploid) 3	10.164
	CNS0095613	Golden flower (tetraploid) 1	14.975
	CNS0095614	Golden flower (tetraploid) 2	17.990
	CNS0095615	Golden flower (tetraploid) 3	13.493
CRA001975	CRR073297	Stem 1	9.700
	CRR073298	Stem 2	7.314
	CRR073299	Stem 3	3.308
	CRR073300	Leaf 1	8.043
	CRR073301	Leaf 2	11.032
	CRR073302	Leaf 3	3.742
	CRR073303	Juvenile bud 1	2.377
	CRR073304	Juvenile bud 2	3.153
	CRR073305	Juvenile bud 3	3.312
	CRR073306	Third green 1	0.680
	CRR073307	Third green 2	0.550
	CRR073308	Third green 3	0.980
	CRR073309	Second white 1	0.717
	CRR073310	Second white 2	2.044
	CRR073311	Second white 3	0.758
	CRR073312	Silver flowering 1	0.546
	CRR073313	Silver flowering 2	1.623
	CRR073314	Silver flowering 3	1.093
	CRR073315	Gold flowering 1	2.846
	CRR073316	Gold flowering 2	3.909
	CRR073317	Gold flowering 3	1.164
	CRR073318	Tawny withering 1	4.811
	CRR073319	Tawny withering 2	6.285
	CRR073320	Tawny withering 3	5.072