Gene detail

Detail information of GWHGAAZE006711

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_010279652.1	PREDICTED: mannosyl-oligosaccharide 1,2-alpha-mannosidase MNS3 [Nelumbo nucifera]
Swissprot	tr\|Q93Y37\|MNS3_ARATH	Mannosyl-oligosaccharide 1,2-alpha-mannosidase MNS3
trEMBL	tr\|A0A022R171\|A0A022R171_ERYGU	alpha-1,2-Mannosidase {ECO:0000256\|RuleBase:RU361193}
TAIR10	AT1G30000.1	alpha-mannosidase 3

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	30609196	30615992	+
GWHAAZE00000002	mRNA	30609196	30615992	+
GWHAAZE00000002	exon	30609196	30609273	+
GWHAAZE00000002	exon	30611099	30612042	+
GWHAAZE00000002	exon	30613011	30613263	+
GWHAAZE00000002	exon	30614648	30614845	+
GWHAAZE00000002	exon	30615013	30615161	+
GWHAAZE00000002	exon	30615734	30615992	+
GWHAAZE00000002	CDS	30609196	30609273	+
GWHAAZE00000002	CDS	30611099	30612042	+
GWHAAZE00000002	CDS	30613011	30613263	+
GWHAAZE00000002	CDS	30614648	30614845	+
GWHAAZE00000002	CDS	30615013	30615161	+
GWHAAZE00000002	CDS	30615734	30615992	+

Transcript Sequence
>GWHTAAZE006719 ATGTCAAAATCCTTACCGTACTCGATGAAAGATGTTCACTACGATAACGCCAAGTTTCGTCAACGATCGTTCGTCAAGGTGATCACTAATAATTTGCTCAACAGTAAAATGAAGCGCGACCATATTAAATGTAGCACGGGCAAGTTTCTTGCATTATTAATGATTGGCGGTTTAGCATATCTTATGCTAACTCATACAAGCCCTGTGCATTCTGTTTCTCATGGCCTATCTAATGATATTGGAGCTACAGGAGGAGATGGCCTCTTAGTGGGTGGTGGCGGAAGATTCAAAAGATTTTGGAGAAAACCACCCAGGCTTCCTCCCCGATTATCGCCTGATGAAATAGGTAATAATAGCAAACAGCTAGATTCGGGTTCTGAATGGATAGCTAGACAACAAAGTGTTAAGAATGCATTTGTTCATGCTTGGTGGGGTTATAAAAAGTACGCGATGGGTTATGATGAACTTATGCCACTGAGCCAGAAAGGAGTTGACGGTTTAGGTGGTCTAGGTGCTACTGTTGTGGATGCTTTAGACACAGCCATGATAATGGGCCTTGATGAAGTTGTCAATGAAGCAGGTTCGTGGATTGAAACACATCTTGCTGAGAAGATAAATAAGAAAGGCCAAGTTAATTTATTTGAAACTACCATTCGTGTTCTTGGTGGTCTTTTGAGTGCTTATCATTTAAGTGGAGGAGAAAATGTGGGGAATGGAACACAAAAGGGCCCTAAACCAATTGTCTATCTAGAAAATGCTAAGAATTTGGCTGATTGTCTTATAACTGCCTTTACATCAAGTCCAACTGCTATTCCTTACAGTGATGTCAATCTGCGGGATCGCTCAGCACATCCTGCCCCTGGCGAAGTGAGTAGCACTTCAGAAGTTTCCACTTTACAGCTCGAGTTCAATTATCTTAGTTTTCTGACTGGTGATCCAAAGTACAGTTTGGAGTCAATGAAGGTTTTGGAACATATGAAGACTCTCCCAAAAGTGGAGGGACTGGTCCCCATATATATCAGCCCTCATTCTGGCGACTTTAGTGGAGATAATATTAGATTGGGATCTCGTGGGGACAGCTACTATGAGTACCTTATTAAAGTATGGCTTCAGCATAAAGGAAATAATTGGACATATTTGCATGACATGTATGTAGACGCAATGAAGGGTGTCAGACACCTTCTTGTTCGGAAATCTGTCCCGAATGGATTGGTTTTCGTGGGGGAATTGCCCTACGGACCTAATGGTGCTTTTAGTCCCAAAATGGATCACCTGGTGTGTTTTCTGCCTGGTACTCTTGCACTTGGGGCTACCAGAGGCATTACAAAGAAAGAGGCTATGAAAGACAACTTGCTCACTTTTGAAGATCTAGAAAACCTGAAGCTTGCGGAAGATCTGGCTAAAACATGCTTTGAAATGTATTCCGTAACTTCTACCGGTCTTGCTCCAGAAATTGCTTATTTCAATGTGGAGGGAAATTCTGAAGGAGGTCCAGGTGGTGGAAACAAGAGTTCAGAATATGTAAATGATATAATTATCAAACCGCTTGATCGTCACAATCTTTTGCGTCCTGAAACTGTTGAATCTTTGTTCGTCTTGTATCGTATCACAGAAGATCCAAAATATCGGGAATGGGGCTGGGAGATCTTTGAGGCATTTGAGAAGCATACAAAGGTTTCTTCTGGAGGTTACACTAGTCTAGATGATGTCACCACACTTCCTCCACAAACAAGAGACAAGATGGAGACCTTTTTCTTGGGTGAAACCCTAAAGTATCTATACTTGTTGTTTGCAGACACCAATCTTATTCCATTGGATAAGTTTGTTTTCAACACAGAAGCTCATCCTTTCCCTATTACAAGCACTGCTAAGAGGGAATGA

Network for GWHGAAZE006711

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01532.21	Glyco_hydro_47	138	619	7.70E-160

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K23741	MAN1B, MNS3	Metabolic pathways	map01100
		N-Glycan biosynthesis	map00510
		Various types of N-glycan biosynthesis	map00513
		Protein processing in endoplasmic reticulum	map04141

Gene Ontology

GO term	Ontology	Name
GO:0016020	cellular_component	membrane
GO:0004571	molecular_function	mannosyl-oligosaccharide 1,2-alpha-mannosidase activity
GO:0005509	molecular_function	calcium ion binding
GO:0003824	molecular_function	catalytic activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	19.975
	SRR3591706	second leaf	10.147
	SRR3591707	mature leaf	12.933
	SRR3591708	Shoot apex	9.313
	SRR3591709	Stem	16.204
	SRR3591710	White floral bud	26.292
	SRR3591711	White flower	25.035
	SRR3591712	Green floral bud	18.523
	SRR3591713	Yellow flower	22.697
SRP173429	SRR8316895	Juvenile bud stage	6.429
	SRR8316896	Juvenile bud stage	8.148
	SRR8316897	Juvenile bud stage	4.708
	SRR8316894	Third green stage	5.144
	SRR8316900	Third green stage	13.898
	SRR8316901	Third green stage	14.106
	SRR8316898	Complete white stage	7.191
	SRR8316899	Complete white stage	15.123
	SRR8316903	Complete white stage	17.770
	SRR8316902	Silver flowering stage	11.568
	SRR8316904	Silver flowering stage	15.230
	SRR8316905	Silver flowering stage	7.077
	SRR8316906	Gold flowering stage	23.448
	SRR8316907	Gold flowering stage	19.058
	SRR8316908	Gold flowering stage	23.170
SRP132670	SRR6706286	Control	10.567
	SRR6706287	Light intensity 50%	10.740
	SRR6706288	Light intensity 20%	11.510
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	6.402
	CNS0095593	Slightly white alabastrum(diploid) 2	6.659
	CNS0095594	Slightly white alabastrum(diploid) 3	5.920
	CNS0095595	Whole white alabastrum(diploid) 2	9.181
	CNS0095596	Whole white alabastrum(diploid) 3	7.863
	CNS0095597	Whole white alabastrum(diploid) 4	12.197
	CNS0095598	Silvery flower (diploied) 1	11.281
	CNS0095599	Silvery flower (diploied) 2	8.750
	CNS0095600	Silvery flower (diploied) 3	25.885
	CNS0095601	Golden flower (diploid) 1	8.521
	CNS0095602	Golden flower (diploid) 2	23.853
	CNS0095603	Golden flower (diploid) 3	23.645
	CNS0095604	Slightly white alabastrum(tetraploid) 1	7.947
	CNS0095605	Slightly white alabastrum(tetraploid) 2	6.160
	CNS0095606	Slightly white alabastrum(tetraploid) 3	13.345
	CNS0095607	Whole white alabastrum(tetraploid) 1	9.694
	CNS0095608	Whole white alabastrum(tetraploid) 2	15.803
	CNS0095609	Whole white alabastrum(tetraploid) 3	14.826
	CNS0095610	Silvery flower (tetraploid) 1	21.408
	CNS0095611	Silvery flower (tetraploid) 2	18.746
	CNS0095612	Silvery flower (tetraploid) 3	28.365
	CNS0095613	Golden flower (tetraploid) 1	13.178
	CNS0095614	Golden flower (tetraploid) 2	19.451
	CNS0095615	Golden flower (tetraploid) 3	27.446
CRA001975	CRR073297	Stem 1	8.931
	CRR073298	Stem 2	8.248
	CRR073299	Stem 3	7.127
	CRR073300	Leaf 1	10.157
	CRR073301	Leaf 2	9.271
	CRR073302	Leaf 3	9.028
	CRR073303	Juvenile bud 1	13.283
	CRR073304	Juvenile bud 2	12.141
	CRR073305	Juvenile bud 3	14.318
	CRR073306	Third green 1	14.666
	CRR073307	Third green 2	11.204
	CRR073308	Third green 3	14.689
	CRR073309	Second white 1	17.883
	CRR073310	Second white 2	14.307
	CRR073311	Second white 3	19.245
	CRR073312	Silver flowering 1	25.012
	CRR073313	Silver flowering 2	26.494
	CRR073314	Silver flowering 3	18.958
	CRR073315	Gold flowering 1	8.749
	CRR073316	Gold flowering 2	11.325
	CRR073317	Gold flowering 3	9.239
	CRR073318	Tawny withering 1	15.568
	CRR073319	Tawny withering 2	15.693
	CRR073320	Tawny withering 3	11.835