Detail information of GWHGAAZE006699


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrNP_001275868.109-cis-epoxycarotenoid dioxygenase 2 [Citrus sinensis]
Swissprottr|Q9M6E8|NCED1_PHAVU09-cis-epoxycarotenoid dioxygenase NCED1, chloroplastic (Precursor)
trEMBLtr|Q1G7I4|Q1G7I4_CITSI09-cis-epoxycarotenoid dioxygenase 2 {ECO:0000313|EMBL:AAY89371.1}
TAIR10AT1G78390.10nine-cis-epoxycarotenoid dioxygenase 9

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene3033627530338733-
GWHAAZE00000002mRNA3033627530338733-
GWHAAZE00000002exon3033627530337223-
GWHAAZE00000002exon3033800630338733-
GWHAAZE00000002CDS3033800630338733-
GWHAAZE00000002CDS3033627530337223-
Transcript Sequence

Network for GWHGAAZE006699

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03055.16RPE65865483.70E-111
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K09840NCED Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Carotenoid biosynthesismap00906

Gene Ontology

GO term OntologyName
GO:0055114biological_processoxidation-reduction process
GO:0016702molecular_functionoxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf1.594
SRR3591706second leaf10.415
SRR3591707mature leaf19.761
SRR3591708Shoot apex0.543
SRR3591709Stem1.274
SRR3591710White floral bud2.269
SRR3591711White flower67.364
SRR3591712Green floral bud3.413
SRR3591713Yellow flower187.925
SRP173429 SRR8316895Juvenile bud stage 1.197
SRR8316896Juvenile bud stage 1.746
SRR8316897Juvenile bud stage 0.507
SRR8316894Third green stage 0.780
SRR8316900Third green stage 0.641
SRR8316901Third green stage 0.301
SRR8316898Complete white stage 0.000
SRR8316899Complete white stage 0.157
SRR8316903Complete white stage 0.156
SRR8316902Silver flowering stage0.792
SRR8316904Silver flowering stage1.958
SRR8316905Silver flowering stage0.450
SRR8316906Gold flowering stage 12.641
SRR8316907Gold flowering stage 25.295
SRR8316908Gold flowering stage 18.739
SRP132670SRR6706286Control1.123
SRR6706287Light intensity 50%1.035
SRR6706288Light intensity 20%1.217
CNP0000432CNS0095592Slightly white alabastrum(diploid) 10.561
CNS0095593Slightly white alabastrum(diploid) 20.108
CNS0095594Slightly white alabastrum(diploid) 30.724
CNS0095595Whole white alabastrum(diploid) 20.634
CNS0095596Whole white alabastrum(diploid) 30.455
CNS0095597Whole white alabastrum(diploid) 40.265
CNS0095598Silvery flower (diploied) 12.114
CNS0095599Silvery flower (diploied) 21.399
CNS0095600Silvery flower (diploied) 34.231
CNS0095601Golden flower (diploid) 11.714
CNS0095602Golden flower (diploid) 242.521
CNS0095603Golden flower (diploid) 342.401
CNS0095604Slightly white alabastrum(tetraploid) 11.788
CNS0095605Slightly white alabastrum(tetraploid) 22.140
CNS0095606Slightly white alabastrum(tetraploid) 32.635
CNS0095607Whole white alabastrum(tetraploid) 11.137
CNS0095608Whole white alabastrum(tetraploid) 20.479
CNS0095609Whole white alabastrum(tetraploid) 30.808
CNS0095610Silvery flower (tetraploid) 111.341
CNS0095611Silvery flower (tetraploid) 26.386
CNS0095612Silvery flower (tetraploid) 31.935
CNS0095613Golden flower (tetraploid) 110.669
CNS0095614Golden flower (tetraploid) 239.129
CNS0095615Golden flower (tetraploid) 332.065
CRA001975CRR073297Stem 14.915
CRR073298Stem 24.017
CRR073299Stem 37.060
CRR073300Leaf 10.617
CRR073301Leaf 20.635
CRR073302Leaf 30.439
CRR073303Juvenile bud 10.302
CRR073304Juvenile bud 20.078
CRR073305Juvenile bud 30.782
CRR073306Third green 11.820
CRR073307Third green 21.015
CRR073308Third green 33.736
CRR073309Second white 123.062
CRR073310Second white 25.944
CRR073311Second white 38.429
CRR073312Silver flowering 117.032
CRR073313Silver flowering 230.603
CRR073314Silver flowering 349.552
CRR073315Gold flowering 14.972
CRR073316Gold flowering 25.101
CRR073317Gold flowering 37.113
CRR073318Tawny withering 117.367
CRR073319Tawny withering 21.779
CRR073320Tawny withering 36.513