Gene detail

Detail information of GWHGAAZE006644

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_002278698.1	PREDICTED: receptor-like protein kinase HSL1 [Vitis vinifera]
Swissprot	tr\|Q9SGP2\|HSL1_ARATH	Receptor-like protein kinase HSL1 (Precursor)
trEMBL	tr\|F6HM39\|F6HM39_VITVI	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB55627.1}
TAIR10	AT1G28440.1	HAESA-like 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	29318355	29321937	+
GWHAAZE00000002	mRNA	29318355	29321937	+
GWHAAZE00000002	exon	29318355	29320938	+
GWHAAZE00000002	exon	29321546	29321937	+
GWHAAZE00000002	CDS	29318355	29320938	+
GWHAAZE00000002	CDS	29321546	29321937	+

Transcript Sequence
>GWHTAAZE006652 ATGCTGCTTCTTCTTCTACAACTCTTCTTCTTCTTCTTTCTCTCTCCTCAACTCATTTTCTCTCTCAACCAAGAAGGTCTCTACCTCCAAAAAATAAAACTCAACTTCGACGACCCTAACGCCGTCTTCTCCACCTGGAACGACCGCGACGACGACCCCTGCAACTGGTACGGCGTCACCTGCAACTCCCTCACTCGTTCTGTTTACTCCCTCGACTTATCCAGCTCCAACATAGCTGGCCCCTTCCCGCCGCTACTCTGCCGTCTTAACGCCCTCCGATACCTCTCTCTCTTCAACAACTCCGTTAACTCCACTCTCCCTTCCGATCTGTCCACTTGTCAAAATCTACTGCACTTAGATCTCTCACAGAATCTACTCACCGGCACTCTCCCCCAAACCCTACCCGACTTAACTAATCTCAAATACCTCGATTTGACCGGAAACAATTTCTCCGGCGATATTCCTCCCAGTTTTGCCAGGTTCCGCCGTCTTGAGGTTTTGTCTCTCGTGGAGAATCTTTTAGACGGACAGATTCCGGCATTTCTCGGTAACATCACTACTCTGAAACAGTTAAATCTCTCGTACAACCCGTTTTTACCGGGTCCGATACCGCCGGAATTCGGTAATTTGACGAATCTCGAGGTGATGTGGCTAACGGATTGCAATTTGGTCGGTCAGATTCCTGACTCGTTGAGTAGACTCGGTCGACTCGTTGATTTGGATGTGGCTGTTAATCACTTGAACGGCATTATTCCGAGCTCACTCACTGCGTTAACTGGGGCTGTGCAGATTGAACTGTATAATAATTCCTTAAGCGGCCGTTTGCCGGAGAGGGGATGGTCGAACATGACGGCGTTGAGATTGTTTGACGCGTCGATGAACGATTTGAACGGGACGATTCCGGACGAGTTGTGTAACTTACCACTCGAATCACTCAATTTGTACGAGAACAAATTGGAAGGCTATTTGCCGGAAAGTATTGCAAAGTCACCGAATATTTACGAGCTAAGGTTGTTTGGAAACCGTTTATCTGGTGAATTACCGAGAGATCTCGGAAAAAATTCGCCTCTGATGTTTGTTGATGTGTCAAATAATCAATTTTCCCGTGAAATTCCGGAGGGTTTGTGCGATAAAGGGGTTTTAGAGGAATTTCTGGTGATCTACAACTCGTTCTCCGGTCAAATTCCGGCGAGTTTGGGCGAATGCAGGAGTTTAACACGTGTCCGGTTGGCTTATAACAAACTCTCCGGTGAAGTTCCGGCGGGTATTTGGGGGCTTCCCAGCATTACCTTGCTGGAGCTAGTGGGGAATTTGTTTTCCGGTGTAATTGCGAAAACTATTGCCGGAGCCGAAAGTTTGTCGGCTTTGATTATCTCGAAGAACAACTTTTCTGGTAGCATACCGGAGGAGCTTGGGTTGTTGGAGAATCTGGTGGAATTTTCCGGCGGTGATAACAAGTTCTCTGGTTTGTTACCAGCTAGTATAGTGAAACTTGAACAGCTGGGAAGAATTGATCTCCACGGAAATGCATTATCCGGGGAGCTACCGAGTGGAATTCATTCACTGAAGAAGCTGAATGAGCTAAATCTAGCTTATAATGACTTCTATGGTAATATCCCGGAGGAAATTGGGAGCTTATCTGTTCTAAATTACCTCGATTTATCGAGCAATAGATTTTCTGGGAAAATTCCATCTGGGTTACAGAATTTGAAGCTCAATCAGTTAAATCTGTCGAATAATCGCCTCTCGGGTGATATTCCGGCGCTGTATGCTAAAGAAATTTACAAGAACAGTTTCTTGGGGAATCCGGGTCTTTGTGGAGATATAAATGGTTTATGTGATGGAAGAAATGAACCTAAGAGCTTAAGCTACGTTTGGTTGCTGAGATCAATCTTTATGCTAGCTGGAATAGTGTTAATCGTGGGTGTGTTTTGGTTCTACTGGAAGTACATGAATTTCAAGAAAGCCAAACGCGCCATTGACAAATCGAAATGGACGTTAATGTCTTTCCACAAACTGGGTTTTAGCGAGTACGAGATACTAGATTCTCTTGATGAAGATAATGTAATAGGAGCCGGTTCTTCAGGTAAAGTTTACAAGGTTGTTCTTAGTAATGGCGAGGCCGTGGCAGTTAAAAAGCTTTGGGGCGGTTCAAAAATGGTGGAAGAGAAAGCTAAAGATGATGGGTTTGAAGCAGAGGTGGAGACATTGGGGAAAATTAGGCATAAGAATATTGTTAGGCTGTGGTGTTGTTGTACCACTAGAGATTGTAAGCTTCTGGTGTATGAGTATATGCCTAATGGTAGTTTGGGTGATTTGCTTCATAGTAACAAAAGTGGCCTGTTGGATTGGCCTGTCAGGTTTAGAATTGCTTTGGATTCGGCTGAGGGGCTCTCGTATTTGCATCACGATTGTGTTCCTCCGATTGTTCACAGGGATGTGAAGTCAAATAATATATTGTTGGATGGGGATTTTGGAGCTAGAGTGGCCGATTTCGGTGTTGCCAAGGCTGTCGATGCTATTGGAAAAGGGAGTAATAAGTCCATGTCGGTTATTGCAGGTTCTTGTGGTTACATTGCACCAGAATATGCATACACGCTAAGAGTGAATGAGAAGAGCGATATATACAGCTTTGGTGTAGTGATGCTCGAGTTAGTCACGGGGCGACTACCGGTTGATCCCGAGTTTGGGGAAAAGGACTTGGTCAAGTGGGTGTGCACCACTTTGGACCAGAAAGGCTTGGACCACGTGCTCGACTCGAAACTTGATTTATGCTTTAAGGAAGAATTATGCAGGGTCCTCAATGTCGGCCTACTCTGCACTAGTCCCCTCCCTATCAACCGCCCCTCGATGAGAAGAGTGGTGAAGATGTTGCAAGAGATTGGCTCCGAAACCCACTTAAAGATTGCCAAAAAAGATGGGAAATTGTCACCTTATTACTACGAAGATGCCTCGGATCATGGAAGTGTTGCTTAA

Network for GWHGAAZE006644

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08263.13	LRRNT_2	23	62	2.30E-11
PF13855.7	LRR_8	112	150	2.30E-06
PF00560.34	LRR_1	549	570	1.5
PF00069.26	Pkinase	686	899	4.00E-42

Protein Sequence

>GWHPAAZE006648
MLLLLLQLFFFFFLSPQLIFSLNQEGLYLQKIKLNFDDPNAVFSTWNDRDDDPCNWYGVTCNSLTRSVYSLDLSSSNIAGPFPPLLCRLNALRYLSLFNNSVNSTLPSDLSTCQNLLHLDLSQNLLTGTLPQTLPDLTNLKYLDLTGNNFSGDIPPSFARFRRLEVLSLVENLLDGQIPAFLGNITTLKQLNLSYNPFLPGPIPPEFGNLTNLEVMWLTDCNLVGQIPDSLSRLGRLVDLDVAVNHLNGIIPSSLTALTGAVQIELYNNSLSGRLPERGWSNMTALRLFDASMNDLNGTIPDELCNLPLESLNLYENKLEGYLPESIAKSPNIYELRLFGNRLSGELPRDLGKNSPLMFVDVSNNQFSREIPEGLCDKGVLEEFLVIYNSFSGQIPASLGECRSLTRVRLAYNKLSGEVPAGIWGLPSITLLELVGNLFSGVIAKTIAGAESLSALIISKNNFSGSIPEELGLLENLVEFSGGDNKFSGLLPASIVKLEQLGRIDLHGNALSGELPSGIHSLKKLNELNLAYNDFYGNIPEEIGSLSVLNYLDLSSNRFSGKIPSGLQNLKLNQLNLSNNRLSGDIPALYAKEIYKNSFLGNPGLCGDINGLCDGRNEPKSLSYVWLLRSIFMLAGIVLIVGVFWFYWKYMNFKKAKRAIDKSKWTLMSFHKLGFSEYEILDSLDEDNVIGAGSSGKVYKVVLSNGEAVAVKKLWGGSKMVEEKAKDDGFEAEVETLGKIRHKNIVRLWCCCTTRDCKLLVYEYMPNGSLGDLLHSNKSGLLDWPVRFRIALDSAEGLSYLHHDCVPPIVHRDVKSNNILLDGDFGARVADFGVAKAVDAIGKGSNKSMSVIAGSCGYIAPEYAYTLRVNEKSDIYSFGVVMLELVTGRLPVDPEFGEKDLVKWVCTTLDQKGLDHVLDSKLDLCFKEELCRVLNVGLLCTSPLPINRPSMRRVVKMLQEIGSETHLKIAKKDGKLSPYYYEDASDHGSVA

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-XI-1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0005515	molecular_function	protein binding
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	12.424
	SRR3591706	second leaf	11.306
	SRR3591707	mature leaf	9.841
	SRR3591708	Shoot apex	13.391
	SRR3591709	Stem	10.648
	SRR3591710	White floral bud	16.219
	SRR3591711	White flower	12.672
	SRR3591712	Green floral bud	20.764
	SRR3591713	Yellow flower	5.603
SRP173429	SRR8316895	Juvenile bud stage	4.192
	SRR8316896	Juvenile bud stage	5.264
	SRR8316897	Juvenile bud stage	2.112
	SRR8316894	Third green stage	6.760
	SRR8316900	Third green stage	13.511
	SRR8316901	Third green stage	9.044
	SRR8316898	Complete white stage	4.204
	SRR8316899	Complete white stage	22.174
	SRR8316903	Complete white stage	9.103
	SRR8316902	Silver flowering stage	1.336
	SRR8316904	Silver flowering stage	2.930
	SRR8316905	Silver flowering stage	1.017
	SRR8316906	Gold flowering stage	2.038
	SRR8316907	Gold flowering stage	2.579
	SRR8316908	Gold flowering stage	2.993
SRP132670	SRR6706286	Control	19.278
	SRR6706287	Light intensity 50%	16.290
	SRR6706288	Light intensity 20%	17.625
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	9.247
	CNS0095593	Slightly white alabastrum(diploid) 2	8.186
	CNS0095594	Slightly white alabastrum(diploid) 3	5.450
	CNS0095595	Whole white alabastrum(diploid) 2	7.637
	CNS0095596	Whole white alabastrum(diploid) 3	7.395
	CNS0095597	Whole white alabastrum(diploid) 4	7.089
	CNS0095598	Silvery flower (diploied) 1	15.449
	CNS0095599	Silvery flower (diploied) 2	5.304
	CNS0095600	Silvery flower (diploied) 3	7.110
	CNS0095601	Golden flower (diploid) 1	6.442
	CNS0095602	Golden flower (diploid) 2	5.834
	CNS0095603	Golden flower (diploid) 3	4.817
	CNS0095604	Slightly white alabastrum(tetraploid) 1	10.763
	CNS0095605	Slightly white alabastrum(tetraploid) 2	7.181
	CNS0095606	Slightly white alabastrum(tetraploid) 3	24.068
	CNS0095607	Whole white alabastrum(tetraploid) 1	8.989
	CNS0095608	Whole white alabastrum(tetraploid) 2	5.590
	CNS0095609	Whole white alabastrum(tetraploid) 3	9.555
	CNS0095610	Silvery flower (tetraploid) 1	4.569
	CNS0095611	Silvery flower (tetraploid) 2	7.546
	CNS0095612	Silvery flower (tetraploid) 3	4.965
	CNS0095613	Golden flower (tetraploid) 1	0.864
	CNS0095614	Golden flower (tetraploid) 2	4.511
	CNS0095615	Golden flower (tetraploid) 3	2.525
CRA001975	CRR073297	Stem 1	19.740
	CRR073298	Stem 2	19.574
	CRR073299	Stem 3	19.135
	CRR073300	Leaf 1	22.663
	CRR073301	Leaf 2	23.040
	CRR073302	Leaf 3	17.045
	CRR073303	Juvenile bud 1	23.965
	CRR073304	Juvenile bud 2	11.763
	CRR073305	Juvenile bud 3	32.623
	CRR073306	Third green 1	3.661
	CRR073307	Third green 2	3.094
	CRR073308	Third green 3	7.285
	CRR073309	Second white 1	0.796
	CRR073310	Second white 2	1.566
	CRR073311	Second white 3	0.921
	CRR073312	Silver flowering 1	2.040
	CRR073313	Silver flowering 2	2.082
	CRR073314	Silver flowering 3	2.720
	CRR073315	Gold flowering 1	10.135
	CRR073316	Gold flowering 2	15.037
	CRR073317	Gold flowering 3	12.237
	CRR073318	Tawny withering 1	10.430
	CRR073319	Tawny withering 2	4.033
	CRR073320	Tawny withering 3	10.025