Detail information of GWHGAAZE006643


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010655457.10PREDICTED: uncharacterized protein LOC100247033 isoform X3 [Vitis vinifera]
trEMBLtr|A0A068TTV7|A0A068TTV7_COFCA0Coffea canephora DH200=94 genomic scaffold, scaffold_4 {ECO:0000313|EMBL:CDO99492.1}
TAIR10AT1G28420.10homeobox-1

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene2926777729282526-
GWHAAZE00000002mRNA2926777729282526-
GWHAAZE00000002exon2926777729268535-
GWHAAZE00000002exon2926896129269224-
GWHAAZE00000002exon2926968529269789-
GWHAAZE00000002exon2926991029270542-
GWHAAZE00000002exon2927158929272092-
GWHAAZE00000002exon2927272529272972-
GWHAAZE00000002exon2927354729273958-
GWHAAZE00000002exon2927411329274322-
GWHAAZE00000002exon2927485829275013-
GWHAAZE00000002exon2927511329275265-
GWHAAZE00000002exon2927571429275800-
GWHAAZE00000002exon2927608229276182-
GWHAAZE00000002exon2927703329277255-
GWHAAZE00000002exon2927738729277551-
GWHAAZE00000002exon2927767729277766-
GWHAAZE00000002exon2927842929278716-
GWHAAZE00000002exon2927970229279781-
GWHAAZE00000002exon2928111929281211-
GWHAAZE00000002exon2928158429282030-
GWHAAZE00000002exon2928240029282526-
GWHAAZE00000002CDS2928240029282526-
GWHAAZE00000002CDS2928158429282030-
GWHAAZE00000002CDS2928111929281211-
GWHAAZE00000002CDS2927970229279781-
GWHAAZE00000002CDS2927842929278716-
GWHAAZE00000002CDS2927767729277766-
GWHAAZE00000002CDS2927738729277551-
GWHAAZE00000002CDS2927703329277255-
GWHAAZE00000002CDS2927608229276182-
GWHAAZE00000002CDS2927571429275800-
GWHAAZE00000002CDS2927511329275265-
GWHAAZE00000002CDS2927485829275013-
GWHAAZE00000002CDS2927411329274322-
GWHAAZE00000002CDS2927354729273958-
GWHAAZE00000002CDS2927272529272972-
GWHAAZE00000002CDS2927158929272092-
GWHAAZE00000002CDS2926991029270542-
GWHAAZE00000002CDS2926968529269789-
GWHAAZE00000002CDS2926896129269224-
GWHAAZE00000002CDS2926777729268535-
Transcript Sequence

Network for GWHGAAZE006643

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00046.30Homeodomain24793.50E-16
PF02791.18DDT5325863.50E-17
PF05066.14HARE-HTH7127798.90E-15
PF15612.7WHIM19099523.80E-05
PF15613.7WSD108111542.00E-14
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyHB-other

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0006351biological_processtranscription, DNA-templated
GO:0006355biological_processregulation of transcription, DNA-templated
GO:0003677molecular_functionDNA binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf13.759
SRR3591706second leaf12.045
SRR3591707mature leaf19.422
SRR3591708Shoot apex11.160
SRR3591709Stem23.237
SRR3591710White floral bud28.837
SRR3591711White flower37.789
SRR3591712Green floral bud18.950
SRR3591713Yellow flower37.863
SRP173429 SRR8316895Juvenile bud stage 10.403
SRR8316896Juvenile bud stage 15.417
SRR8316897Juvenile bud stage 6.489
SRR8316894Third green stage 7.540
SRR8316900Third green stage 14.654
SRR8316901Third green stage 16.511
SRR8316898Complete white stage 5.296
SRR8316899Complete white stage 15.942
SRR8316903Complete white stage 17.722
SRR8316902Silver flowering stage12.263
SRR8316904Silver flowering stage19.895
SRR8316905Silver flowering stage9.739
SRR8316906Gold flowering stage 45.015
SRR8316907Gold flowering stage 36.752
SRR8316908Gold flowering stage 34.069
SRP132670SRR6706286Control16.799
SRR6706287Light intensity 50%17.707
SRR6706288Light intensity 20%17.289
CNP0000432CNS0095592Slightly white alabastrum(diploid) 19.231
CNS0095593Slightly white alabastrum(diploid) 28.848
CNS0095594Slightly white alabastrum(diploid) 39.949
CNS0095595Whole white alabastrum(diploid) 29.063
CNS0095596Whole white alabastrum(diploid) 37.439
CNS0095597Whole white alabastrum(diploid) 49.005
CNS0095598Silvery flower (diploied) 114.397
CNS0095599Silvery flower (diploied) 211.475
CNS0095600Silvery flower (diploied) 325.823
CNS0095601Golden flower (diploid) 112.041
CNS0095602Golden flower (diploid) 228.379
CNS0095603Golden flower (diploid) 327.595
CNS0095604Slightly white alabastrum(tetraploid) 111.098
CNS0095605Slightly white alabastrum(tetraploid) 28.111
CNS0095606Slightly white alabastrum(tetraploid) 316.471
CNS0095607Whole white alabastrum(tetraploid) 18.626
CNS0095608Whole white alabastrum(tetraploid) 28.228
CNS0095609Whole white alabastrum(tetraploid) 314.128
CNS0095610Silvery flower (tetraploid) 124.799
CNS0095611Silvery flower (tetraploid) 221.688
CNS0095612Silvery flower (tetraploid) 327.781
CNS0095613Golden flower (tetraploid) 120.233
CNS0095614Golden flower (tetraploid) 224.611
CNS0095615Golden flower (tetraploid) 352.735
CRA001975CRR073297Stem 115.741
CRR073298Stem 213.757
CRR073299Stem 37.960
CRR073300Leaf 116.397
CRR073301Leaf 214.508
CRR073302Leaf 36.613
CRR073303Juvenile bud 19.315
CRR073304Juvenile bud 27.207
CRR073305Juvenile bud 314.174
CRR073306Third green 110.074
CRR073307Third green 26.718
CRR073308Third green 311.265
CRR073309Second white 16.177
CRR073310Second white 214.124
CRR073311Second white 315.175
CRR073312Silver flowering 115.020
CRR073313Silver flowering 213.871
CRR073314Silver flowering 314.005
CRR073315Gold flowering 12.532
CRR073316Gold flowering 28.103
CRR073317Gold flowering 32.677
CRR073318Tawny withering 110.287
CRR073319Tawny withering 28.530
CRR073320Tawny withering 38.149