Gene detail

Detail information of GWHGAAZE006633

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CBI30593.3	0	unnamed protein product [Vitis vinifera]
Swissprot	tr\|Q8VZD4\|DEG15_ARATH	0	Glyoxysomal processing protease, glyoxysomal
trEMBL	tr\|F6HM26\|F6HM26_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB55614.1}
TAIR10	AT1G28320.1	1E-173	protease-related

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	29068418	29088223	-
GWHAAZE00000002	mRNA	29068418	29088223	-
GWHAAZE00000002	exon	29088158	29088223	-
GWHAAZE00000002	exon	29087986	29088032	-
GWHAAZE00000002	exon	29087502	29087685	-
GWHAAZE00000002	exon	29087125	29087172	-
GWHAAZE00000002	exon	29086490	29086630	-
GWHAAZE00000002	exon	29085982	29086074	-
GWHAAZE00000002	exon	29085724	29085827	-
GWHAAZE00000002	exon	29085445	29085530	-
GWHAAZE00000002	exon	29084922	29085079	-
GWHAAZE00000002	exon	29083543	29084137	-
GWHAAZE00000002	exon	29082614	29082803	-
GWHAAZE00000002	exon	29082299	29082390	-
GWHAAZE00000002	exon	29081914	29082168	-
GWHAAZE00000002	exon	29081783	29081834	-
GWHAAZE00000002	exon	29068418	29069045	-
GWHAAZE00000002	CDS	29088158	29088223	-
GWHAAZE00000002	CDS	29087986	29088032	-
GWHAAZE00000002	CDS	29087502	29087685	-
GWHAAZE00000002	CDS	29087125	29087172	-
GWHAAZE00000002	CDS	29086490	29086630	-
GWHAAZE00000002	CDS	29085982	29086074	-
GWHAAZE00000002	CDS	29085724	29085827	-
GWHAAZE00000002	CDS	29085445	29085530	-
GWHAAZE00000002	CDS	29084922	29085079	-
GWHAAZE00000002	CDS	29083543	29084137	-
GWHAAZE00000002	CDS	29082614	29082803	-
GWHAAZE00000002	CDS	29082299	29082390	-
GWHAAZE00000002	CDS	29081914	29082168	-
GWHAAZE00000002	CDS	29081783	29081834	-
GWHAAZE00000002	CDS	29068418	29069045	-

Transcript Sequence
>GWHTAAZE006641 ATGGATTTGCACAACACCGTCGATTTTGCCCGTAATTTCTCCGTCATGATCAGAGTTCAAGGCCCCGATCCAAAGGGCCTGAAGATGCGAAAACATGCTTTCCACCATTACAACTCTGGCAAAACAACACTATCAGCATCCGGGATGCTGTTGCCTAATTCATTTTATGATCCTGCTCTAGCCAATAAATTTTTTGGCAACAGTGATACACAAGCATTTCAGAGTTCGTTGGTTTTGACTGTTGCATCTGTTATTGAGCCATTTATATCACTACAGCACAGGGAGAACATATCTCAGGGCAAACATGATTTGATTCCTGGTTCTGAGATTGATATAATGGTAGAGGTCGAGATTCCTGTATCATCAAGTTCGGTCCAGTCGCTTATTGAGGGTTCTGGCTCATCTGAACATGGTTGGGAAGTTGGATGGTCCTTGGCTTCATACAGTAACAGCCCTCAACCTTCAATCGATTCTTTTCAAACACAGCAATCTTCAATGACGGACAAAGAATTAAGAAATCCCAATCTTATGGGGAAGTCAACTACCCGAATTGCAATACTTGGAGTGTCCTCACTTGAGGATCCACCAAAGTTAAATATATTATGTCCAAGTAAGAGGGGAGATCTTTTTCTGGCAATGGGTTCTCCTTTTGGTATCTTGTCTCCTCTGCACTTCTTTAACAGCATATCGGTGGGATCAATTGCCAATTGCTATCCAGCTGGTTCCTCTAACAGATCATTGTACATGGCTGACGTTCGTTGTCTTCCTGGAATGGAAGGTAGTCCAGTTTTTGGAGAACAGGCACAACTCATTGGGATCCTAACAAGACCTCTACAACAAAAGACTACTGGTGCCGAGATTCAAGTAACAAAAAATCCTTTAGCTCTAGACTTTACACAAACTACTACTGGGGACATAGTTAATCAACTGTTGATACCTTGGGAAGCCATTGCAACTGCTTGCAGTGACTTGCTGCAACAAGGGGCTCAAAGCTCACACATCGTTTCTTTTTCTAATGGTCTCAAGTCAGATGGATCATTGGATCATATTCATGAGCATCCAAATGCTGGTTACCCTCCACCATCTCTTCTCGAGAAGGCAATGGCTTCTACATGTCTTGTCACCATTGATGGTGGAGTATGGGCTTCTGGTGTTTTACTGAACAACCAAGGCCTTATTCTTACTAATGCTCACCTTTTGGAGCCATGGAGGTTTGGGAAAGCAACCGCAAATGGTGAAATAAATGAATTTAAATCAAATGGTGATGAGTGTGGGCGATACAAATTTAATTTGGCCAGCATAAGCTATAGAAGAAGCATACGCATTCGATTGGATCATATGGACCCTTGGATATGGTGTGATGCTAGGGTGGTATATGTTTCTAAAGGACCTTTGGATGTAGCACTACTGCAGCTTGAGTTTGTTCCGGATGAACTTTGTCCCATTGTTATGGACTTTACTTGTCCCTCTGTGGGATCGAAGGCATATATTATTGGACATGGACTATTTGGGCCGCGATGTGACTTCTTTCCATCTGTTTGCATTGGTGTAGTAGCTAAAGTAGTAAAAGCAAATAGGCCTCTAGCCCATCGATCGAACCAACAACAGAGGCAATTTCCGGCAATGATCGAAACCACAGCGGCTGTGCATCCAGGAGGTAGTGGTGGTGCTGTTGTCAATTCAGATGGTCATATGATTGGCCTTGTCACTAGCAATGCAAGACATGGTGGAGGCACAGTTATACCACATCTGAATTTCAGCATACCATGTGCTGCCTTGGGGCCTATCTTCAAGTTCTCAAAAGACACAGAGGATTTTTCGCTCCTAGAAGAGCTTGAAATACCAAATGAACATCTTTCTTCTGTATGGGCGCTGCTGCCACCACTCTCTCCCAAGCCAGGCCCCTCTCTGCCTAATCTTCCACCATTACCACAAGGCGATAACAATAATGAAATCAAGGGTTCTCGTTTTGCTAAATTTATAGCGGAAAGACATGGTTTATTGAAAAAGAATTCTCAATTTAACAAGGTGGAAAGCCTTTCTAGTAAGTTCATTCCCAACGTGGACCTTTTTAATGCATTCTGGTGGGAAGACGGAATGGTCGAGGAAGACTTATCACAACCAAGGCACTTTTGCAAAGCTTGTAAGCGTTATTGGACCCGAGGGGGTACCCTTAGAAATGTCCCGGTTGGCGGTGGGTGTAGAAAGAACAAGAAGGTTAAGAAACATTCAATCTCGGATGTTGATTCGCCTTCATCATCACTCCCCACTACTACTACAAACCCTAATTTGAATCCTCCTTTGTTTTACGGCGTACCCACCAATCCTTCTTATTACAGTTTCAACAACTTTAAGGTTATGAACGTGGACGAGGTATCCGGTTATGATCTTCATACTCAGATGAACACGGTTCATGAATTAGGGTTTGCTAGCTCTAGTTCAGCTCTTTCAAGCTATCCTTTCTTTGGATCTTTAACTAGTAATTCGATGGCTTCTTTGATAGGTTCTAGTCTTGAGCAACAACAAAAGTACGTGTCAGTTAACAATTTTTCTGGTCAGGCACCGCATGATGAACATGACATGAAAACTAAGGATACGCAGAACAAGATGGATTGGGTTAATATCGTTCCTAATGGTTTGCAGAACCAGATCCAACATATAGGTTCTTCATCGGATTCTTCTCTTTTGTGGATGCTCGATCCTGCAAATATTGGTTCTTCGGTCCCTTCTTTGATCTAG

Network for GWHGAAZE006633

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13365.7	Trypsin_2	166	273	3.50E-06
PF13365.7	Trypsin_2	382	568	1.60E-22
PF02701.16	zf-Dof	703	739	3.40E-18

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	C2C2-Dof

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006508	biological_process	proteolysis
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0004252	molecular_function	serine-type endopeptidase activity
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	17.975
	SRR3591706	second leaf	8.929
	SRR3591707	mature leaf	11.032
	SRR3591708	Shoot apex	11.568
	SRR3591709	Stem	16.896
	SRR3591710	White floral bud	16.062
	SRR3591711	White flower	13.252
	SRR3591712	Green floral bud	18.014
	SRR3591713	Yellow flower	12.091
SRP173429	SRR8316895	Juvenile bud stage	9.199
	SRR8316896	Juvenile bud stage	11.465
	SRR8316897	Juvenile bud stage	8.013
	SRR8316894	Third green stage	7.503
	SRR8316900	Third green stage	21.772
	SRR8316901	Third green stage	19.341
	SRR8316898	Complete white stage	10.908
	SRR8316899	Complete white stage	38.499
	SRR8316903	Complete white stage	17.622
	SRR8316902	Silver flowering stage	5.716
	SRR8316904	Silver flowering stage	9.637
	SRR8316905	Silver flowering stage	4.312
	SRR8316906	Gold flowering stage	10.485
	SRR8316907	Gold flowering stage	11.832
	SRR8316908	Gold flowering stage	11.367
SRP132670	SRR6706286	Control	21.199
	SRR6706287	Light intensity 50%	21.177
	SRR6706288	Light intensity 20%	21.915
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	11.329
	CNS0095593	Slightly white alabastrum(diploid) 2	10.754
	CNS0095594	Slightly white alabastrum(diploid) 3	8.633
	CNS0095595	Whole white alabastrum(diploid) 2	11.252
	CNS0095596	Whole white alabastrum(diploid) 3	11.722
	CNS0095597	Whole white alabastrum(diploid) 4	8.845
	CNS0095598	Silvery flower (diploied) 1	11.894
	CNS0095599	Silvery flower (diploied) 2	9.140
	CNS0095600	Silvery flower (diploied) 3	15.797
	CNS0095601	Golden flower (diploid) 1	6.341
	CNS0095602	Golden flower (diploid) 2	10.821
	CNS0095603	Golden flower (diploid) 3	11.389
	CNS0095604	Slightly white alabastrum(tetraploid) 1	15.318
	CNS0095605	Slightly white alabastrum(tetraploid) 2	11.756
	CNS0095606	Slightly white alabastrum(tetraploid) 3	25.864
	CNS0095607	Whole white alabastrum(tetraploid) 1	9.923
	CNS0095608	Whole white alabastrum(tetraploid) 2	10.224
	CNS0095609	Whole white alabastrum(tetraploid) 3	17.733
	CNS0095610	Silvery flower (tetraploid) 1	17.084
	CNS0095611	Silvery flower (tetraploid) 2	18.403
	CNS0095612	Silvery flower (tetraploid) 3	13.542
	CNS0095613	Golden flower (tetraploid) 1	6.951
	CNS0095614	Golden flower (tetraploid) 2	12.434
	CNS0095615	Golden flower (tetraploid) 3	7.107
CRA001975	CRR073297	Stem 1	10.591
	CRR073298	Stem 2	10.598
	CRR073299	Stem 3	8.480
	CRR073300	Leaf 1	14.342
	CRR073301	Leaf 2	13.754
	CRR073302	Leaf 3	9.476
	CRR073303	Juvenile bud 1	11.660
	CRR073304	Juvenile bud 2	8.734
	CRR073305	Juvenile bud 3	16.181
	CRR073306	Third green 1	2.841
	CRR073307	Third green 2	2.905
	CRR073308	Third green 3	2.891
	CRR073309	Second white 1	3.440
	CRR073310	Second white 2	2.358
	CRR073311	Second white 3	2.190
	CRR073312	Silver flowering 1	1.389
	CRR073313	Silver flowering 2	1.845
	CRR073314	Silver flowering 3	0.856
	CRR073315	Gold flowering 1	5.207
	CRR073316	Gold flowering 2	9.158
	CRR073317	Gold flowering 3	5.969
	CRR073318	Tawny withering 1	8.252
	CRR073319	Tawny withering 2	7.080
	CRR073320	Tawny withering 3	9.468