Gene detail

Detail information of GWHGAAZE006509

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009758707.1	0	PREDICTED: arogenate dehydratase/prephenate dehydratase 1, chloroplastic [Nicotiana sylvestris]
Swissprot	tr\|Q9SA96\|AROD1_ARATH	1E-180	Arogenate dehydratase/prephenate dehydratase 1, chloroplastic (Precursor)
trEMBL	tr\|A0A059CBH4\|A0A059CBH4_EUCGR	0	Uncharacterized protein {ECO:0000313\|EMBL:KCW75290.1}
TAIR10	AT1G11790.1	1E-144	arogenate dehydratase 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	26751270	26757490	-
GWHAAZE00000002	mRNA	26751270	26757490	-
GWHAAZE00000002	exon	26751270	26751326	-
GWHAAZE00000002	exon	26751474	26751555	-
GWHAAZE00000002	exon	26752942	26753009	-
GWHAAZE00000002	exon	26753105	26753194	-
GWHAAZE00000002	exon	26753283	26753360	-
GWHAAZE00000002	exon	26754135	26754230	-
GWHAAZE00000002	exon	26754319	26754399	-
GWHAAZE00000002	exon	26755207	26755407	-
GWHAAZE00000002	exon	26755497	26755589	-
GWHAAZE00000002	exon	26755665	26755730	-
GWHAAZE00000002	exon	26757116	26757490	-
GWHAAZE00000002	CDS	26757116	26757490	-
GWHAAZE00000002	CDS	26755665	26755730	-
GWHAAZE00000002	CDS	26755497	26755589	-
GWHAAZE00000002	CDS	26755207	26755407	-
GWHAAZE00000002	CDS	26754319	26754399	-
GWHAAZE00000002	CDS	26754135	26754230	-
GWHAAZE00000002	CDS	26753283	26753360	-
GWHAAZE00000002	CDS	26753105	26753194	-
GWHAAZE00000002	CDS	26752942	26753009	-
GWHAAZE00000002	CDS	26751474	26751555	-
GWHAAZE00000002	CDS	26751270	26751326	-

Transcript Sequence
>GWHTAAZE006517 ATGGCTTCTTCAAAAGCTGTACCAATCTGGGTTTCTGCCAATCATCGTCAATTGGGTTCATCATATTCGCTTCATAAACCATCTGGGTTTTGCTTGAATTCGAATTCGAATTCGAATTTCAATGTGAATTTGGGTTTTGGTAGAAATTTTCACAAATGGGAGTGTTTAGGTTTGTTGGCTCAAAGGGCAATTACCCCTCTTGAAGACGAGAAGCCATTGATTGATTCTCCTCCGGTCGAAACTGAGAACACCCAGATCACTGAATCCAGGGGACTTCACAAGGATTTGAACTCTCTTCCTAGTAAGTTTTTTTTTGTTTTTTTTACTTTTTTTTAATCTCTCTCTCTCTCTATTTATTTCTTTCTTTAAAATTTTCCCTTGTCTGCAACAGATAATATTTCTTCTCCCATTGATGGTTCAAAGGTCCGGGTTGCTTATCAGGGGGTTCCAGGTGCGTACAGTGAGGCTGCTGCACTTAAAGCTTACCCAAAATGTGAGACTGTCCCATGTGAGCAGTTTGAAGCTGTATTTAAGGCAGTTGAGCTGTGGTTGGTGGATAAAGCAGTGCTCCCAATTGAAAATTCTGTAGGTGGAAGTATACATCGTAATTATGACTTACTACTTCGTCATAGGCTACACATAGTAGGTGAAGTGCAGTTGGTTGTTAACCACTGCCTTTTGGGTTTGCCTGGGGTCAAAAAGGAGGAGCTAAAGCGTGTTCTCAGCCACCCTCAGGCACTTGATCAATGTGAGATGACGCTAAACAAGTTAGGTGTTATCAGAGTCAGTGCTGATGATACTGCCGGTGCTGCTCAGATTATAGCCTACAATGGCATCAGAGATACTGGTGCCGTTGCTAGTACTCGAGCTGCTGAAATCTATGGCCTTGACATTCTTGCAGAAAAAATTCAGGATGACTCTGATAATATTACCCGCTTTCTGATACTTGCAAGGGAACCTATAATCCCAGGAACTAACAGACCCCATAAGACAAGTATTGTCTTCACTCTAGAAGAAGGCCCTGGGATACTGTTCAAAGCTTTAGCAGTGTTTGCTCTAAGAGGCATTAATTTGTCAAAGATTGAAAGTCGACCACAGAGAAAGCGACCGTTAAGGATTGTTGATGACAGTAACAGAGGAAGTGCCAAGTATTTTGACTACCTCTTTTACATCGATTTTGAAGCTTCTATGATGGAGCCTCGTGCCCAATTCGCCCTTGGACATCTTCAGGAATTTGCAGGATTTCTTCGGGTCCTTGGTTGCTATCCTATGGATACTGCTATATAG

Network for GWHGAAZE006509

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00800.19	PDT	142	318	1.70E-57

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K05359	ADT, PDT	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Biosynthesis of amino acids	map01230
		Phenylalanine, tyrosine and tryptophan biosynthesis	map00400

Gene Ontology

GO term	Ontology	Name
GO:0009094	biological_process	L-phenylalanine biosynthetic process
GO:0004664	molecular_function	prephenate dehydratase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	19.200
	SRR3591706	second leaf	11.866
	SRR3591707	mature leaf	4.009
	SRR3591708	Shoot apex	14.324
	SRR3591709	Stem	16.713
	SRR3591710	White floral bud	1.133
	SRR3591711	White flower	2.592
	SRR3591712	Green floral bud	3.350
	SRR3591713	Yellow flower	13.160
SRP173429	SRR8316895	Juvenile bud stage	4.655
	SRR8316896	Juvenile bud stage	5.805
	SRR8316897	Juvenile bud stage	2.044
	SRR8316894	Third green stage	2.301
	SRR8316900	Third green stage	4.184
	SRR8316901	Third green stage	3.910
	SRR8316898	Complete white stage	0.579
	SRR8316899	Complete white stage	3.544
	SRR8316903	Complete white stage	0.806
	SRR8316902	Silver flowering stage	0.167
	SRR8316904	Silver flowering stage	0.412
	SRR8316905	Silver flowering stage	0.345
	SRR8316906	Gold flowering stage	2.809
	SRR8316907	Gold flowering stage	1.728
	SRR8316908	Gold flowering stage	4.425
SRP132670	SRR6706286	Control	2.989
	SRR6706287	Light intensity 50%	2.893
	SRR6706288	Light intensity 20%	3.400
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	5.617
	CNS0095593	Slightly white alabastrum(diploid) 2	3.932
	CNS0095594	Slightly white alabastrum(diploid) 3	4.778
	CNS0095595	Whole white alabastrum(diploid) 2	2.149
	CNS0095596	Whole white alabastrum(diploid) 3	2.896
	CNS0095597	Whole white alabastrum(diploid) 4	2.172
	CNS0095598	Silvery flower (diploied) 1	3.884
	CNS0095599	Silvery flower (diploied) 2	2.702
	CNS0095600	Silvery flower (diploied) 3	1.275
	CNS0095601	Golden flower (diploid) 1	2.824
	CNS0095602	Golden flower (diploid) 2	3.289
	CNS0095603	Golden flower (diploid) 3	3.365
	CNS0095604	Slightly white alabastrum(tetraploid) 1	3.551
	CNS0095605	Slightly white alabastrum(tetraploid) 2	3.480
	CNS0095606	Slightly white alabastrum(tetraploid) 3	3.399
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.223
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.286
	CNS0095609	Whole white alabastrum(tetraploid) 3	2.724
	CNS0095610	Silvery flower (tetraploid) 1	1.725
	CNS0095611	Silvery flower (tetraploid) 2	1.630
	CNS0095612	Silvery flower (tetraploid) 3	0.609
	CNS0095613	Golden flower (tetraploid) 1	2.556
	CNS0095614	Golden flower (tetraploid) 2	5.103
	CNS0095615	Golden flower (tetraploid) 3	2.556
CRA001975	CRR073297	Stem 1	6.395
	CRR073298	Stem 2	5.502
	CRR073299	Stem 3	5.942
	CRR073300	Leaf 1	3.789
	CRR073301	Leaf 2	4.353
	CRR073302	Leaf 3	3.494
	CRR073303	Juvenile bud 1	2.116
	CRR073304	Juvenile bud 2	1.656
	CRR073305	Juvenile bud 3	3.300
	CRR073306	Third green 1	0.095
	CRR073307	Third green 2	0.052
	CRR073308	Third green 3	0.320
	CRR073309	Second white 1	0.960
	CRR073310	Second white 2	0.348
	CRR073311	Second white 3	0.276
	CRR073312	Silver flowering 1	2.466
	CRR073313	Silver flowering 2	3.919
	CRR073314	Silver flowering 3	3.824
	CRR073315	Gold flowering 1	2.045
	CRR073316	Gold flowering 2	5.308
	CRR073317	Gold flowering 3	2.693
	CRR073318	Tawny withering 1	12.862
	CRR073319	Tawny withering 2	9.969
	CRR073320	Tawny withering 3	11.515