Gene detail

Detail information of GWHGAAZE006476

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011008636.1	0	PREDICTED: transcription initiation factor IIF subunit alpha [Populus euphratica]
Swissprot	tr\|Q9SU25\|T2FA_ARATH	1E-171	Transcription initiation factor IIF subunit alpha
trEMBL	tr\|B9HCF8\|B9HCF8_POPTR	0	Transcription initiation factor IIF alpha subunit family protein {ECO:0000313\|EMBL:EEE92298.1}
TAIR10	AT4G12610.2	3E-61	transcription activators;DNA binding;RNA polymerase II transcription factors;catalytics;transcription initiation factors

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	26205360	26211020	+
GWHAAZE00000002	mRNA	26205360	26211020	+
GWHAAZE00000002	exon	26205360	26205530	+
GWHAAZE00000002	exon	26206395	26206553	+
GWHAAZE00000002	exon	26208564	26208709	+
GWHAAZE00000002	exon	26208899	26209266	+
GWHAAZE00000002	exon	26209539	26209654	+
GWHAAZE00000002	exon	26209837	26209977	+
GWHAAZE00000002	exon	26210495	26210716	+
GWHAAZE00000002	exon	26210802	26211020	+
GWHAAZE00000002	CDS	26205360	26205530	+
GWHAAZE00000002	CDS	26206395	26206553	+
GWHAAZE00000002	CDS	26208564	26208709	+
GWHAAZE00000002	CDS	26208899	26209266	+
GWHAAZE00000002	CDS	26209539	26209654	+
GWHAAZE00000002	CDS	26209837	26209977	+
GWHAAZE00000002	CDS	26210495	26210716	+
GWHAAZE00000002	CDS	26210802	26211020	+

Transcript Sequence
>GWHTAAZE006484 ATGCCGTTTGATTTGATATTGAAGCCGTCGTGTGGCGGTTGTGGATCGACGGTGGAATTGTACGGAAGCAGTTGCAAGCACTTGACCCTTTGTGTTTCTTGTGGCAAAACCATGGCTCAGAACAAGGGCAAATGCTTCGAGTGTGGAGCCACCATCACTAAATTGATTAGGGAATACAATGTTCGGGCATACTCTAGCAGTGAGAAGAGTTATTTCATTGGTAGATTTACAAATGGTTTACCGAAGTTTTCTAAAAAGAAGAAAGCTGAGAATAAATGGACTCTTCAAAAAGAAGGATTACAAGGTCGCCAAGTTACCGATACCTTACGGGCAAGGTGTAAGAATAAACCTTGGCTGTTGAAGGATGAAACCAGTCAGTGTCAGTACAATGGCGTGCTTGAGGGTACACAGTCAGCAACTTACTACCTACTAATGCTACAGGGAAAAGAGTTTGTTGCAATTCCAGCTAGCTCTTGGTATAACTTCAACAAAGTTCCGCAATATAACCAACTGACTCTGGATGAAGCAGAAGAAAAGATGGCACATAGAAGAAAAACAGCTGATGGGTATGAAAGATGGATGATGAAAGCTGCAAATAATGGGGCTGCTGCTTTTGGAGAAATTGAAAAGCTTGATGACAAAGAAAATGGAGCAGGTGGTGGGAGGGGACGTAAGAAAACTTCTGGTGATGATGATAAAGCCAATGCCTCAGACAATGAAGATGAAGAAGAAAAGTCGGTGAGGAAAAATAGACTTGGACTTAATACAAAAGGTGGTGGCGATGATGATGAAGAAGGTCCAAGAGGAGGTGATCTTGATTTGGACGATGATGACATTGAAAAGGGCGATGATTGGGAGCACGAAGAAATTTTCACGGACGACGATGAAGCTGTTGCAATTGATCCTGAAGAACGTGAAGATTTGGGTCCTGAAGTTCCCGCTCCTCCAGAAATTAAGCAGGATGAAGAGGATGAAGATGAAACTAACGAAGAGGAGGAGGGCGGACTAAGCAAATCTGGAAAAGAGTTGAAGAAGTTGCTCAGTCGAACTAGTGGGCTAAATGAGTCCAAAGCGGAGAATGACAATGATGATGAAGATGACGTGGAAGATGAAACTGATCCTTCTAATGTACCAAATCTAAAGCAGAAGGATTCTCTTAAACAAGAAGCTGCTGATAATAGTACTTTGAAGAGGGCTTCTTCTGGATCTGCTTCCGTAAACACGCCTGCTTCCAAGTTAGCAAAAGGAAAGAGAACAATGAACGCTGATGATTCAAAGCCAACCAATAATGCTACCCCTCCAAAAAAAGTGAAGACAGAAAATGATGTGAAACCCGTGAAAGATGAAATGGTCTCTACCCCGAAAAGTAGTGTGCCTTCCAAAGGTGGATCATCATCTTCTGAAAATACAGGACCTGTCACAGAAGATGAGATTAGGGGTGTTTTATTGCAGAAAACACCCGTGACCACCCAGGATCTTGTTGATAAATTTAGACCTAGACTAAAAATAAAAGAGGTACGCCCTTCTAATTTTCGTGGTTGA

Network for GWHGAAZE006476

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF05793.13	TFIIF_alpha	48	504	2.00E-118

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K03138	TFIIF1, GTF2F1, TFG1	Basal transcription factors	map03022

Gene Ontology

GO term	Ontology	Name
GO:0006367	biological_process	transcription initiation from RNA polymerase II promoter
GO:0032968	biological_process	positive regulation of transcription elongation from RNA polymerase II promoter
GO:0005634	cellular_component	nucleus
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	2.756
	SRR3591706	second leaf	0.537
	SRR3591707	mature leaf	0.464
	SRR3591708	Shoot apex	1.843
	SRR3591709	Stem	4.423
	SRR3591710	White floral bud	6.759
	SRR3591711	White flower	1.352
	SRR3591712	Green floral bud	13.047
	SRR3591713	Yellow flower	1.603
SRP173429	SRR8316895	Juvenile bud stage	7.203
	SRR8316896	Juvenile bud stage	13.696
	SRR8316897	Juvenile bud stage	5.223
	SRR8316894	Third green stage	3.961
	SRR8316900	Third green stage	9.495
	SRR8316901	Third green stage	10.470
	SRR8316898	Complete white stage	2.901
	SRR8316899	Complete white stage	5.737
	SRR8316903	Complete white stage	4.020
	SRR8316902	Silver flowering stage	1.442
	SRR8316904	Silver flowering stage	2.378
	SRR8316905	Silver flowering stage	1.571
	SRR8316906	Gold flowering stage	5.167
	SRR8316907	Gold flowering stage	4.596
	SRR8316908	Gold flowering stage	1.238
SRP132670	SRR6706286	Control	7.571
	SRR6706287	Light intensity 50%	7.128
	SRR6706288	Light intensity 20%	7.044
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	10.646
	CNS0095593	Slightly white alabastrum(diploid) 2	5.546
	CNS0095594	Slightly white alabastrum(diploid) 3	11.539
	CNS0095595	Whole white alabastrum(diploid) 2	8.793
	CNS0095596	Whole white alabastrum(diploid) 3	8.642
	CNS0095597	Whole white alabastrum(diploid) 4	7.501
	CNS0095598	Silvery flower (diploied) 1	7.294
	CNS0095599	Silvery flower (diploied) 2	6.020
	CNS0095600	Silvery flower (diploied) 3	4.472
	CNS0095601	Golden flower (diploid) 1	6.297
	CNS0095602	Golden flower (diploid) 2	3.470
	CNS0095603	Golden flower (diploid) 3	4.141
	CNS0095604	Slightly white alabastrum(tetraploid) 1	9.714
	CNS0095605	Slightly white alabastrum(tetraploid) 2	7.414
	CNS0095606	Slightly white alabastrum(tetraploid) 3	4.552
	CNS0095607	Whole white alabastrum(tetraploid) 1	8.553
	CNS0095608	Whole white alabastrum(tetraploid) 2	7.941
	CNS0095609	Whole white alabastrum(tetraploid) 3	9.134
	CNS0095610	Silvery flower (tetraploid) 1	5.552
	CNS0095611	Silvery flower (tetraploid) 2	2.369
	CNS0095612	Silvery flower (tetraploid) 3	2.716
	CNS0095613	Golden flower (tetraploid) 1	3.126
	CNS0095614	Golden flower (tetraploid) 2	3.305
	CNS0095615	Golden flower (tetraploid) 3	1.115
CRA001975	CRR073297	Stem 1	7.804
	CRR073298	Stem 2	6.963
	CRR073299	Stem 3	4.040
	CRR073300	Leaf 1	6.979
	CRR073301	Leaf 2	6.707
	CRR073302	Leaf 3	4.429
	CRR073303	Juvenile bud 1	4.354
	CRR073304	Juvenile bud 2	3.112
	CRR073305	Juvenile bud 3	2.410
	CRR073306	Third green 1	2.124
	CRR073307	Third green 2	1.286
	CRR073308	Third green 3	1.795
	CRR073309	Second white 1	0.616
	CRR073310	Second white 2	1.882
	CRR073311	Second white 3	3.841
	CRR073312	Silver flowering 1	2.276
	CRR073313	Silver flowering 2	1.569
	CRR073314	Silver flowering 3	2.091
	CRR073315	Gold flowering 1	1.024
	CRR073316	Gold flowering 2	1.189
	CRR073317	Gold flowering 3	0.428
	CRR073318	Tawny withering 1	4.339
	CRR073319	Tawny withering 2	3.499
	CRR073320	Tawny withering 3	2.525