Gene detail

Detail information of GWHGAAZE006472

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_008455513.1	1.4406E-112	PREDICTED: rho GDP-dissociation inhibitor 1-like [Cucumis melo]
Swissprot	tr\|Q9SFC6\|GDIR_ARATH	4E-103	Rho GDP-dissociation inhibitor 1
trEMBL	tr\|A0A0A0K6K3\|A0A0A0K6K3_CUCSA	1E-112	Uncharacterized protein {ECO:0000313\|EMBL:KGN43446.1}
TAIR10	AT3G07880.1	6E-79	Immunoglobulin E-set superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	26133242	26136319	+
GWHAAZE00000002	mRNA	26133242	26136319	+
GWHAAZE00000002	exon	26133242	26133856	+
GWHAAZE00000002	exon	26133989	26134055	+
GWHAAZE00000002	exon	26135460	26135708	+
GWHAAZE00000002	exon	26135789	26135913	+
GWHAAZE00000002	exon	26136236	26136319	+
GWHAAZE00000002	five_prime_UTR	26133242	26133664	+
GWHAAZE00000002	CDS	26133665	26133856	+
GWHAAZE00000002	CDS	26133989	26134055	+
GWHAAZE00000002	CDS	26135460	26135708	+
GWHAAZE00000002	CDS	26135789	26135913	+
GWHAAZE00000002	CDS	26136236	26136319	+

Transcript Sequence
>GWHTAAZE006480 AACCCACTCTATATCACACACCATTTCTTTCACTTGGGTAAATTCCCAATTTCTGTATTTCGGATCACCACAGGACCATTTCTCTCTCTCTCTCTCTCTCCTATTTTCTTGTTATCCTCTTCTTTTAAGAAGGATTACCTTTTGTGGGTATTCTTCGTCCTGCACTTTTTTTTATTTGCCTTTCTTGGATTCTTTGACCCGATTCCTTCTCTTTATCTTTAATTTTCTTCTTTTATTGATTTGGGCTTCACCCAATTTGTTGTTTGCATCAGAGGTTCTTTTTACTCTCCCATTGCCTTGTTTCTATGTTCTTTGCCTTTTCTGGGTTTTGTTTTGTTTATCTCAAAATTTTTCTCTAATCAAATTTGAGGTGAGGCTAATTTTTGGTACTAGTAGTAATTGAATGAGTTGTGGTTGTTGTTGATGTCTTTGGCCGTTGGAGTTGCTTCAAGTTCCAAAAGCATCATGGGTTTAGATGAAAAGGAGGAGCCTAAAGTAGCGGAAGCTAATAATAAAACAGAATCAGAGAATGAGGAGGAAGATGAAGAAGATGTTGGAGGCAAGATTGAGTTGGGGCCTCAACGCACTCTCAAAGAACAATTTGAAAAGGACAAGGATGATGAGAGCTTGAGGAGGTGGAAAGAACAACTTCTTGGGAGTGTTGATATTGAGTCTGTTGGAGAGACTCTTGATCCAGAAGTTAAGATTTTGAGCCTTGCAATTAAATCTCCGGGTAGAGCTGATATCTTTCTTCCACTTCCTGAGGAAGGAGATCCCCGAGGCTCATGGTTTACTTTGAAAGAGGGGAGCCGTTACAGCTTAAAGTTCACTTTCCAGGTCAGCAATAACATTGTATCCGGCCTCAAATACATCAATACCGTTTGGAAAACTGGTTTAAAGGGTAGCCACTCTCCCCTGTCTTTGTCTCTATTGGACAGCACGAAAGAAATGATTGGAACCTTCAGTCCTCAGCTAGAGCCTTACACACATGAAATGCCAGAGGAGACAACTCCTTCGGGCATGTTTGCTAGAGGATCATATGTGGCTAAAACAAAGTTTCTTGATGATGACAACAAGTGTTACTTGGAGATTAACTACACCTTTGATATTCGGAAAGATTGGCAGGCGGACTTGAAGTGA

Network for GWHGAAZE006472

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02115.18	Rho_GDI	34	232	5.40E-77

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12462	ARHGDI, RHOGDI	Vasopressin-regulated water reabsorption	map04962
K12462	ARHGDI, RHOGDI	Neurotrophin signaling pathway	map04722

Gene Ontology

GO term	Ontology	Name
GO:0005737	cellular_component	cytoplasm
GO:0005094	molecular_function	Rho GDP-dissociation inhibitor activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	26.252
	SRR3591706	second leaf	15.333
	SRR3591707	mature leaf	6.306
	SRR3591708	Shoot apex	24.531
	SRR3591709	Stem	16.166
	SRR3591710	White floral bud	31.537
	SRR3591711	White flower	8.471
	SRR3591712	Green floral bud	83.877
	SRR3591713	Yellow flower	4.600
SRP173429	SRR8316895	Juvenile bud stage	15.288
	SRR8316896	Juvenile bud stage	54.766
	SRR8316897	Juvenile bud stage	17.433
	SRR8316894	Third green stage	23.959
	SRR8316900	Third green stage	90.301
	SRR8316901	Third green stage	91.758
	SRR8316898	Complete white stage	4.384
	SRR8316899	Complete white stage	15.074
	SRR8316903	Complete white stage	8.454
	SRR8316902	Silver flowering stage	4.331
	SRR8316904	Silver flowering stage	7.882
	SRR8316905	Silver flowering stage	4.392
	SRR8316906	Gold flowering stage	6.403
	SRR8316907	Gold flowering stage	5.757
	SRR8316908	Gold flowering stage	5.208
SRP132670	SRR6706286	Control	7.546
	SRR6706287	Light intensity 50%	11.145
	SRR6706288	Light intensity 20%	8.579
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	70.416
	CNS0095593	Slightly white alabastrum(diploid) 2	46.229
	CNS0095594	Slightly white alabastrum(diploid) 3	78.107
	CNS0095595	Whole white alabastrum(diploid) 2	69.818
	CNS0095596	Whole white alabastrum(diploid) 3	101.973
	CNS0095597	Whole white alabastrum(diploid) 4	71.769
	CNS0095598	Silvery flower (diploied) 1	14.743
	CNS0095599	Silvery flower (diploied) 2	11.363
	CNS0095600	Silvery flower (diploied) 3	10.138
	CNS0095601	Golden flower (diploid) 1	13.034
	CNS0095602	Golden flower (diploid) 2	8.122
	CNS0095603	Golden flower (diploid) 3	9.803
	CNS0095604	Slightly white alabastrum(tetraploid) 1	115.720
	CNS0095605	Slightly white alabastrum(tetraploid) 2	102.323
	CNS0095606	Slightly white alabastrum(tetraploid) 3	10.744
	CNS0095607	Whole white alabastrum(tetraploid) 1	155.456
	CNS0095608	Whole white alabastrum(tetraploid) 2	160.429
	CNS0095609	Whole white alabastrum(tetraploid) 3	104.165
	CNS0095610	Silvery flower (tetraploid) 1	6.775
	CNS0095611	Silvery flower (tetraploid) 2	9.560
	CNS0095612	Silvery flower (tetraploid) 3	10.116
	CNS0095613	Golden flower (tetraploid) 1	5.489
	CNS0095614	Golden flower (tetraploid) 2	4.066
	CNS0095615	Golden flower (tetraploid) 3	6.877
CRA001975	CRR073297	Stem 1	24.839
	CRR073298	Stem 2	29.200
	CRR073299	Stem 3	22.336
	CRR073300	Leaf 1	37.722
	CRR073301	Leaf 2	33.390
	CRR073302	Leaf 3	26.829
	CRR073303	Juvenile bud 1	22.932
	CRR073304	Juvenile bud 2	22.917
	CRR073305	Juvenile bud 3	9.725
	CRR073306	Third green 1	5.194
	CRR073307	Third green 2	9.272
	CRR073308	Third green 3	6.022
	CRR073309	Second white 1	1.357
	CRR073310	Second white 2	3.344
	CRR073311	Second white 3	3.158
	CRR073312	Silver flowering 1	3.647
	CRR073313	Silver flowering 2	5.836
	CRR073314	Silver flowering 3	3.375
	CRR073315	Gold flowering 1	14.539
	CRR073316	Gold flowering 2	13.212
	CRR073317	Gold flowering 3	8.894
	CRR073318	Tawny withering 1	7.377
	CRR073319	Tawny withering 2	9.252
	CRR073320	Tawny withering 3	11.194