Gene detail

Detail information of GWHGAAZE006458

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010644549.1	3.0475E-131	PREDICTED: serine acetyltransferase 1, chloroplastic [Vitis vinifera]
Swissprot	tr\|Q42588\|SAT1_ARATH	7E-120	Serine acetyltransferase 1, chloroplastic
trEMBL	tr\|F6I536\|F6I536_VITVI	1E-131	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB61991.1}
TAIR10	AT1G55920.1	9E-97	serine acetyltransferase 2;1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	25917954	25918778	+
GWHAAZE00000002	mRNA	25917954	25918778	+
GWHAAZE00000002	exon	25917954	25918778	+
GWHAAZE00000002	CDS	25917954	25918778	+

Transcript Sequence
>GWHTAAZE006466 ATGAAATTATGCCGACCCATTGTCACTAGTCACTGTTATGCTCCAAAATCTAGCGACCCATTGAAAATCAGTCCAATTCATGGTGACGAAGAAGATCATATATGGATATCAATTCAAGAAGAGGCTCAATCAGACGTAATTCAAGAACCCATATTGTCAAAGTACTATTATACCTCAATACTATCACACACTTCACTAGAAAGCGCACTATCGAATCATTTGGCAAGCAAACTGGGCAATGCAAGTCTTCCTAGTGAAACCCTCTACAAAGTTTTCTTAAGCATATTTATTGAAGATAATGAAATCAAAGGAGCCATTAGAGATGATCTCAAAGCTGCAAAAGAGCGGGACCCGGCTTGCATTAGTTATGTTCACTGCCTTCTGAACTTCAAAGGGTTCTTAGCATGCCAAGCCCATAGAGTGGCACACAAGTTATGGTCACAAGGCAGGTCTGCCTTAGCCCTACTAATTCAAAGCCAGGTTTCGGAGGTTTTTGCAGTGGACATACATCCCAGAGCAAAGATCGGACGGGGAATATTGATCGATCACGCCACCGGAGTAGTGATCGGAGAGACGGCAGTGATCGGAGACAATGTGTCAATTTTGCATAATGTCACATTAGGAGGGACAGGGAAAGGGACAGGGGATAGGCACCCCAAGATTGGTGACGGGGTACTAATAGGAGCTGGGGCTGAAGTCTTGGGGAATATTAGAGTTGGAAGTGGTGCTAAAATTGGGGCTGGCTCAGTTGTTTTAAAGGAAGTGACTCCTACAGCTACTGTTGTTGGTAATCCTGCTAGGATGGTTGGTAAGAAAGATAGATGA

Network for GWHGAAZE006458

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF06426.15	SATase_N	34	138	3.50E-36
PF00132.25	Hexapep	173	209	0.00028
PF00132.25	Hexapep	218	252	1.00E-09

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00640	cysE	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Microbial metabolism in diverse environments	map01120
		Carbon metabolism	map01200
		Biosynthesis of amino acids	map01230
		Sulfur metabolism	map00920
		Cysteine and methionine metabolism	map00270
		Biofilm formation - Vibrio cholerae	map05111

Gene Ontology

GO term	Ontology	Name
GO:0006535	biological_process	cysteine biosynthetic process from serine
GO:0005737	cellular_component	cytoplasm
GO:0016740	molecular_function	transferase activity
GO:0009001	molecular_function	serine O-acetyltransferase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.764
	SRR3591706	second leaf	0.454
	SRR3591707	mature leaf	0.286
	SRR3591708	Shoot apex	1.584
	SRR3591709	Stem	2.666
	SRR3591710	White floral bud	0.359
	SRR3591711	White flower	1.375
	SRR3591712	Green floral bud	0.295
	SRR3591713	Yellow flower	0.806
SRP173429	SRR8316895	Juvenile bud stage	0.433
	SRR8316896	Juvenile bud stage	1.008
	SRR8316897	Juvenile bud stage	0.500
	SRR8316894	Third green stage	0.266
	SRR8316900	Third green stage	0.054
	SRR8316901	Third green stage	0.252
	SRR8316898	Complete white stage	0.052
	SRR8316899	Complete white stage	0.339
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.099
	SRR8316904	Silver flowering stage	0.166
	SRR8316905	Silver flowering stage	0.250
	SRR8316906	Gold flowering stage	1.580
	SRR8316907	Gold flowering stage	1.080
	SRR8316908	Gold flowering stage	2.057
SRP132670	SRR6706286	Control	0.523
	SRR6706287	Light intensity 50%	0.389
	SRR6706288	Light intensity 20%	0.367
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.008
	CNS0095593	Slightly white alabastrum(diploid) 2	3.978
	CNS0095594	Slightly white alabastrum(diploid) 3	3.088
	CNS0095595	Whole white alabastrum(diploid) 2	2.475
	CNS0095596	Whole white alabastrum(diploid) 3	0.078
	CNS0095597	Whole white alabastrum(diploid) 4	2.913
	CNS0095598	Silvery flower (diploied) 1	1.186
	CNS0095599	Silvery flower (diploied) 2	1.348
	CNS0095600	Silvery flower (diploied) 3	0.811
	CNS0095601	Golden flower (diploid) 1	4.256
	CNS0095602	Golden flower (diploid) 2	2.301
	CNS0095603	Golden flower (diploid) 3	2.049
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.066
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.106
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.117
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.290
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.021
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.275
	CNS0095610	Silvery flower (tetraploid) 1	0.122
	CNS0095611	Silvery flower (tetraploid) 2	0.125
	CNS0095612	Silvery flower (tetraploid) 3	0.226
	CNS0095613	Golden flower (tetraploid) 1	0.052
	CNS0095614	Golden flower (tetraploid) 2	0.189
	CNS0095615	Golden flower (tetraploid) 3	0.173
CRA001975	CRR073297	Stem 1	0.403
	CRR073298	Stem 2	0.096
	CRR073299	Stem 3	0.120
	CRR073300	Leaf 1	0.326
	CRR073301	Leaf 2	0.077
	CRR073302	Leaf 3	0.336
	CRR073303	Juvenile bud 1	0.144
	CRR073304	Juvenile bud 2	0.059
	CRR073305	Juvenile bud 3	0.523
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.032
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.192
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.172
	CRR073313	Silver flowering 2	0.326
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.059
	CRR073316	Gold flowering 2	0.499
	CRR073317	Gold flowering 3	0.652
	CRR073318	Tawny withering 1	7.360
	CRR073319	Tawny withering 2	15.327
	CRR073320	Tawny withering 3	6.118