Gene detail

Detail information of GWHGAAZE006447

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011002372.1	2.9532E-133	PREDICTED: SNF1-related protein kinase regulatory subunit beta-2-like [Populus euphratica]
Swissprot	tr\|Q9SCY5\|KINB2_ARATH	8E-125	SNF1-related protein kinase regulatory subunit beta-2
trEMBL	tr\|A0A067KGY8\|A0A067KGY8_JATCU	1E-133	Uncharacterized protein {ECO:0000313\|EMBL:KDP35506.1}
TAIR10	AT4G16360.3	2E-99	5'-AMP-activated protein kinase beta-2 subunit protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	25729024	25732072	+
GWHAAZE00000002	mRNA	25729024	25732072	+
GWHAAZE00000002	exon	25729024	25729220	+
GWHAAZE00000002	exon	25729325	25729487	+
GWHAAZE00000002	exon	25731749	25732072	+
GWHAAZE00000002	CDS	25729024	25729220	+
GWHAAZE00000002	CDS	25729325	25729487	+
GWHAAZE00000002	CDS	25731749	25732072	+

Transcript Sequence
>GWHTAAZE006455 ATGTTCTGCCTTTTCCAGGTTCCAGTGGTGCCTTTGCAAAGACCTGATGAGTTGCAGATGCCAAGCCCCTCATGGATGCAAACTACATCAGGGTATGAAGACATGTGCAATGAGCAAAGAATTCCAACTATGATCACATGGAGCTATGATGGCAAGGAAGTTGCTGTTGAGGGATCATGGGATAATTGGAAAACTAGGAAGCCCTTGCAGAGATCAGGGAAAGACTTCACAATTATGAAAGTGCTGCCTTCAGGAGTATACCAGTATCGGTTTATTGTTGACGGACAGTGGAGGTATGCCCCCGACTTGCCATGGAGCCAGGATGAAGCAGGCAATGCTTACAACATCTTAGACTTGCAAGATTATGTGCCAGAAGATATTGAAAGCATATCTGGTTTTGAACCACCTCAGTCCCCGGATTCAAGCTATAACAGCTTTCAACTAGGTGCAGAGGACTTCACAAAGGAGCCACCAATTGTTCCTCCACACCTGCAAATGACCTTGCTTAATGTACCATCAGCCCACATGGAGATTCCACCTCCTTCAAGACCTCAGCATGTGGTGCTTAACCATCTCTACATGCAGAAAGGGAGGAATAGCCCTTCTGTTGTTGCACTTGGTTCTACCCACTGCTTCTTAGCCAATTATGTGATAGTCATACTATACAAGTCCATACAGAGGTAA

Network for GWHGAAZE006447

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF16561.6	AMPK1_CBM	41	120	6.30E-32
PF04739.16	AMPKBI	154	223	2.00E-14

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K07199	PRKAB	Apelin signaling pathway	map04371
		FoxO signaling pathway	map04068
		AMPK signaling pathway	map04152
		Tight junction	map04530
		Insulin signaling pathway	map04910
		Glucagon signaling pathway	map04922
		Adipocytokine signaling pathway	map04920
		Oxytocin signaling pathway	map04921
		Longevity regulating pathway	map04211
		Longevity regulating pathway - multiple species	map04213
		Circadian rhythm	map04710
		Thermogenesis	map04714

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	7.417
	SRR3591706	second leaf	9.257
	SRR3591707	mature leaf	6.936
	SRR3591708	Shoot apex	12.132
	SRR3591709	Stem	11.783
	SRR3591710	White floral bud	15.347
	SRR3591711	White flower	13.554
	SRR3591712	Green floral bud	17.494
	SRR3591713	Yellow flower	12.530
SRP173429	SRR8316895	Juvenile bud stage	19.990
	SRR8316896	Juvenile bud stage	28.519
	SRR8316897	Juvenile bud stage	9.697
	SRR8316894	Third green stage	10.410
	SRR8316900	Third green stage	28.086
	SRR8316901	Third green stage	28.975
	SRR8316898	Complete white stage	12.967
	SRR8316899	Complete white stage	31.665
	SRR8316903	Complete white stage	18.723
	SRR8316902	Silver flowering stage	9.721
	SRR8316904	Silver flowering stage	13.903
	SRR8316905	Silver flowering stage	8.944
	SRR8316906	Gold flowering stage	36.607
	SRR8316907	Gold flowering stage	33.007
	SRR8316908	Gold flowering stage	32.660
SRP132670	SRR6706286	Control	31.529
	SRR6706287	Light intensity 50%	29.700
	SRR6706288	Light intensity 20%	29.779
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	27.796
	CNS0095593	Slightly white alabastrum(diploid) 2	28.668
	CNS0095594	Slightly white alabastrum(diploid) 3	22.216
	CNS0095595	Whole white alabastrum(diploid) 2	23.882
	CNS0095596	Whole white alabastrum(diploid) 3	16.014
	CNS0095597	Whole white alabastrum(diploid) 4	21.619
	CNS0095598	Silvery flower (diploied) 1	19.463
	CNS0095599	Silvery flower (diploied) 2	22.221
	CNS0095600	Silvery flower (diploied) 3	22.037
	CNS0095601	Golden flower (diploid) 1	18.166
	CNS0095602	Golden flower (diploid) 2	21.344
	CNS0095603	Golden flower (diploid) 3	20.502
	CNS0095604	Slightly white alabastrum(tetraploid) 1	38.017
	CNS0095605	Slightly white alabastrum(tetraploid) 2	39.932
	CNS0095606	Slightly white alabastrum(tetraploid) 3	35.055
	CNS0095607	Whole white alabastrum(tetraploid) 1	32.787
	CNS0095608	Whole white alabastrum(tetraploid) 2	27.474
	CNS0095609	Whole white alabastrum(tetraploid) 3	28.865
	CNS0095610	Silvery flower (tetraploid) 1	29.946
	CNS0095611	Silvery flower (tetraploid) 2	29.545
	CNS0095612	Silvery flower (tetraploid) 3	42.608
	CNS0095613	Golden flower (tetraploid) 1	25.369
	CNS0095614	Golden flower (tetraploid) 2	32.272
	CNS0095615	Golden flower (tetraploid) 3	19.397
CRA001975	CRR073297	Stem 1	38.601
	CRR073298	Stem 2	37.566
	CRR073299	Stem 3	37.375
	CRR073300	Leaf 1	47.220
	CRR073301	Leaf 2	48.058
	CRR073302	Leaf 3	33.900
	CRR073303	Juvenile bud 1	29.547
	CRR073304	Juvenile bud 2	32.108
	CRR073305	Juvenile bud 3	39.756
	CRR073306	Third green 1	39.854
	CRR073307	Third green 2	28.003
	CRR073308	Third green 3	33.073
	CRR073309	Second white 1	41.115
	CRR073310	Second white 2	32.957
	CRR073311	Second white 3	28.055
	CRR073312	Silver flowering 1	30.666
	CRR073313	Silver flowering 2	29.765
	CRR073314	Silver flowering 3	26.346
	CRR073315	Gold flowering 1	20.584
	CRR073316	Gold flowering 2	18.401
	CRR073317	Gold flowering 3	17.947
	CRR073318	Tawny withering 1	19.319
	CRR073319	Tawny withering 2	17.185
	CRR073320	Tawny withering 3	20.431