Detail information of GWHGAAZE006442


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009771160.11.0435E-106PREDICTED: trihelix transcription factor GT-2 [Nicotiana sylvestris]
Swissprottr|Q39117|TGT2_ARATH3E-41Trihelix transcription factor GT-2
trEMBLtr|K4D676|K4D676_SOLLC7E-101Uncharacterized protein {ECO:0000313|EnsemblPlants:Solyc11g012720.1.1}
TAIR10AT5G47660.17E-36Homeodomain-like superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene2568174825684276-
GWHAAZE00000002mRNA2568174825684276-
GWHAAZE00000002exon2568174825682498-
GWHAAZE00000002exon2568380725684276-
GWHAAZE00000002CDS2568380725684276-
GWHAAZE00000002CDS2568174825682498-
Transcript Sequence

Network for GWHGAAZE006442

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13837.7Myb_DNA-bind_42943782.20E-19
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyTrihelix

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf3.554
SRR3591706second leaf0.826
SRR3591707mature leaf2.417
SRR3591708Shoot apex4.326
SRR3591709Stem4.171
SRR3591710White floral bud1.975
SRR3591711White flower2.408
SRR3591712Green floral bud2.216
SRR3591713Yellow flower1.066
SRP173429 SRR8316895Juvenile bud stage 3.866
SRR8316896Juvenile bud stage 5.487
SRR8316897Juvenile bud stage 1.899
SRR8316894Third green stage 1.185
SRR8316900Third green stage 1.988
SRR8316901Third green stage 1.724
SRR8316898Complete white stage 0.228
SRR8316899Complete white stage 1.791
SRR8316903Complete white stage 0.857
SRR8316902Silver flowering stage0.384
SRR8316904Silver flowering stage0.662
SRR8316905Silver flowering stage0.243
SRR8316906Gold flowering stage 0.587
SRR8316907Gold flowering stage 0.660
SRR8316908Gold flowering stage 0.800
SRP132670SRR6706286Control1.835
SRR6706287Light intensity 50%1.602
SRR6706288Light intensity 20%1.350
CNP0000432CNS0095592Slightly white alabastrum(diploid) 13.471
CNS0095593Slightly white alabastrum(diploid) 23.051
CNS0095594Slightly white alabastrum(diploid) 35.438
CNS0095595Whole white alabastrum(diploid) 22.316
CNS0095596Whole white alabastrum(diploid) 31.543
CNS0095597Whole white alabastrum(diploid) 41.115
CNS0095598Silvery flower (diploied) 14.161
CNS0095599Silvery flower (diploied) 22.883
CNS0095600Silvery flower (diploied) 31.649
CNS0095601Golden flower (diploid) 11.798
CNS0095602Golden flower (diploid) 22.811
CNS0095603Golden flower (diploid) 32.031
CNS0095604Slightly white alabastrum(tetraploid) 12.128
CNS0095605Slightly white alabastrum(tetraploid) 22.219
CNS0095606Slightly white alabastrum(tetraploid) 32.329
CNS0095607Whole white alabastrum(tetraploid) 11.660
CNS0095608Whole white alabastrum(tetraploid) 20.911
CNS0095609Whole white alabastrum(tetraploid) 31.886
CNS0095610Silvery flower (tetraploid) 10.836
CNS0095611Silvery flower (tetraploid) 21.222
CNS0095612Silvery flower (tetraploid) 31.359
CNS0095613Golden flower (tetraploid) 10.802
CNS0095614Golden flower (tetraploid) 21.165
CNS0095615Golden flower (tetraploid) 30.533
CRA001975CRR073297Stem 12.439
CRR073298Stem 22.762
CRR073299Stem 32.637
CRR073300Leaf 10.680
CRR073301Leaf 20.630
CRR073302Leaf 30.207
CRR073303Juvenile bud 10.229
CRR073304Juvenile bud 20.864
CRR073305Juvenile bud 30.566
CRR073306Third green 10.174
CRR073307Third green 20.124
CRR073308Third green 30.120
CRR073309Second white 10.082
CRR073310Second white 20.235
CRR073311Second white 30.000
CRR073312Silver flowering 10.000
CRR073313Silver flowering 20.538
CRR073314Silver flowering 30.168
CRR073315Gold flowering 11.077
CRR073316Gold flowering 22.017
CRR073317Gold flowering 31.420
CRR073318Tawny withering 11.458
CRR073319Tawny withering 20.790
CRR073320Tawny withering 33.033