Detail information of GWHGAAZE006397


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009341221.10PREDICTED: lon protease homolog 2, peroxisomal-like isoform X2 [Pyrus x bretschneideri]
Swissprottr|O04979|LONP2_SPIOL0Lon protease homolog 2, peroxisomal {ECO:0000255|HAMAP-Rule:MF_03121}
trEMBLtr|A0A022R2J5|A0A022R2J5_ERYGU0Lon protease homolog 2, peroxisomal {ECO:0000256|HAMAP-Rule:MF_03121}
TAIR10AT5G47040.10lon protease 2

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene2490698924925018-
GWHAAZE00000002mRNA2490698924925018-
GWHAAZE00000002exon2492490924925018-
GWHAAZE00000002exon2492405824924170-
GWHAAZE00000002exon2492387824923986-
GWHAAZE00000002exon2492317524923344-
GWHAAZE00000002exon2492025524920346-
GWHAAZE00000002exon2491939424919573-
GWHAAZE00000002exon2491812224918205-
GWHAAZE00000002exon2491741324917540-
GWHAAZE00000002exon2491538424915585-
GWHAAZE00000002exon2491508524915291-
GWHAAZE00000002exon2491390124914031-
GWHAAZE00000002exon2491357324913786-
GWHAAZE00000002exon2491200524912308-
GWHAAZE00000002exon2491143424911633-
GWHAAZE00000002exon2490926624909511-
GWHAAZE00000002exon2490824424908345-
GWHAAZE00000002exon2490698924907123-
GWHAAZE00000002five_prime_UTR2492501624925018-
GWHAAZE00000002CDS2492490924925015-
GWHAAZE00000002CDS2492405824924170-
GWHAAZE00000002CDS2492387824923986-
GWHAAZE00000002CDS2492317524923344-
GWHAAZE00000002CDS2492025524920346-
GWHAAZE00000002CDS2491939424919573-
GWHAAZE00000002CDS2491812224918205-
GWHAAZE00000002CDS2491741324917540-
GWHAAZE00000002CDS2491538424915585-
GWHAAZE00000002CDS2491508524915291-
GWHAAZE00000002CDS2491390124914031-
GWHAAZE00000002CDS2491357324913786-
GWHAAZE00000002CDS2491200524912308-
GWHAAZE00000002CDS2491143424911633-
GWHAAZE00000002CDS2490926624909511-
GWHAAZE00000002CDS2490824424908345-
GWHAAZE00000002CDS2490698924907123-
Transcript Sequence

Network for GWHGAAZE006397

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF02190.17LON_substr_bdg132547.20E-25
PF00004.30AAA4055428.90E-22
PF05362.14Lon_C6888693.70E-71
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K01338lon Cell cycle - Caulobacter map04112

Gene Ontology

GO term OntologyName
GO:0006508biological_processproteolysis
GO:0006515biological_processprotein quality control for misfolded or incompletely synthesized proteins
GO:0004176molecular_functionATP-dependent peptidase activity
GO:0005524molecular_functionATP binding
GO:0004252molecular_functionserine-type endopeptidase activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf63.775
SRR3591706second leaf53.977
SRR3591707mature leaf76.934
SRR3591708Shoot apex52.582
SRR3591709Stem68.916
SRR3591710White floral bud95.491
SRR3591711White flower97.841
SRR3591712Green floral bud64.436
SRR3591713Yellow flower107.536
SRP173429 SRR8316895Juvenile bud stage 30.776
SRR8316896Juvenile bud stage 38.427
SRR8316897Juvenile bud stage 16.246
SRR8316894Third green stage 17.602
SRR8316900Third green stage 46.675
SRR8316901Third green stage 54.556
SRR8316898Complete white stage 35.596
SRR8316899Complete white stage 106.475
SRR8316903Complete white stage 81.463
SRR8316902Silver flowering stage83.272
SRR8316904Silver flowering stage129.747
SRR8316905Silver flowering stage77.875
SRR8316906Gold flowering stage 212.565
SRR8316907Gold flowering stage 216.434
SRR8316908Gold flowering stage 213.307
SRP132670SRR6706286Control97.521
SRR6706287Light intensity 50%94.037
SRR6706288Light intensity 20%93.908
CNP0000432CNS0095592Slightly white alabastrum(diploid) 127.703
CNS0095593Slightly white alabastrum(diploid) 223.006
CNS0095594Slightly white alabastrum(diploid) 325.135
CNS0095595Whole white alabastrum(diploid) 224.794
CNS0095596Whole white alabastrum(diploid) 319.976
CNS0095597Whole white alabastrum(diploid) 425.223
CNS0095598Silvery flower (diploied) 151.523
CNS0095599Silvery flower (diploied) 238.314
CNS0095600Silvery flower (diploied) 397.207
CNS0095601Golden flower (diploid) 146.542
CNS0095602Golden flower (diploid) 2110.197
CNS0095603Golden flower (diploid) 3109.424
CNS0095604Slightly white alabastrum(tetraploid) 125.967
CNS0095605Slightly white alabastrum(tetraploid) 222.342
CNS0095606Slightly white alabastrum(tetraploid) 358.901
CNS0095607Whole white alabastrum(tetraploid) 120.030
CNS0095608Whole white alabastrum(tetraploid) 219.071
CNS0095609Whole white alabastrum(tetraploid) 348.057
CNS0095610Silvery flower (tetraploid) 1140.948
CNS0095611Silvery flower (tetraploid) 288.452
CNS0095612Silvery flower (tetraploid) 358.506
CNS0095613Golden flower (tetraploid) 184.984
CNS0095614Golden flower (tetraploid) 2112.225
CNS0095615Golden flower (tetraploid) 3122.508
CRA001975CRR073297Stem 167.452
CRR073298Stem 261.046
CRR073299Stem 355.845
CRR073300Leaf 172.854
CRR073301Leaf 261.681
CRR073302Leaf 355.261
CRR073303Juvenile bud 160.622
CRR073304Juvenile bud 286.980
CRR073305Juvenile bud 388.597
CRR073306Third green 155.219
CRR073307Third green 246.081
CRR073308Third green 356.023
CRR073309Second white 148.316
CRR073310Second white 255.160
CRR073311Second white 358.797
CRR073312Silver flowering 151.267
CRR073313Silver flowering 245.441
CRR073314Silver flowering 341.637
CRR073315Gold flowering 155.995
CRR073316Gold flowering 2104.285
CRR073317Gold flowering 362.958
CRR073318Tawny withering 135.606
CRR073319Tawny withering 225.970
CRR073320Tawny withering 330.489