Gene detail

Detail information of GWHGAAZE006372

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007039568.1	0	Phosphoribosyltransferase family protein [Theobroma cacao]
Swissprot	tr\|Q42583\|KPRS2_ARATH	0	Ribose-phosphate pyrophosphokinase 2, chloroplastic (Precursor)
trEMBL	tr\|A0A061GAJ9\|A0A061GAJ9_THECC	0	Phosphoribosyltransferase family protein {ECO:0000313\|EMBL:EOY24069.1}
TAIR10	AT1G32380.1	3E-180	phosphoribosyl pyrophosphate (PRPP) synthase 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	24449337	24457243	+
GWHAAZE00000002	mRNA	24449337	24457243	+
GWHAAZE00000002	exon	24449337	24449603	+
GWHAAZE00000002	exon	24450607	24450771	+
GWHAAZE00000002	exon	24451611	24451621	+
GWHAAZE00000002	exon	24451707	24451749	+
GWHAAZE00000002	exon	24452429	24452677	+
GWHAAZE00000002	exon	24453059	24453202	+
GWHAAZE00000002	exon	24453291	24453458	+
GWHAAZE00000002	exon	24454986	24455055	+
GWHAAZE00000002	exon	24456347	24456428	+
GWHAAZE00000002	exon	24457063	24457243	+
GWHAAZE00000002	five_prime_UTR	24449337	24449465	+
GWHAAZE00000002	CDS	24449466	24449603	+
GWHAAZE00000002	CDS	24450607	24450771	+
GWHAAZE00000002	CDS	24451611	24451621	+
GWHAAZE00000002	CDS	24451707	24451749	+
GWHAAZE00000002	CDS	24452429	24452677	+
GWHAAZE00000002	CDS	24453059	24453202	+
GWHAAZE00000002	CDS	24453291	24453458	+
GWHAAZE00000002	CDS	24454986	24455055	+
GWHAAZE00000002	CDS	24456347	24456428	+
GWHAAZE00000002	CDS	24457063	24457243	+

Transcript Sequence
>GWHTAAZE006380 ATACAAAAAAAAAAAAGCAATGAGAAAAGCCTTTTTCTCTTCCCTTCTCCCTTTCTCCCTCAATTTCACACAATCATTCACTCGAAACCCTAATCTAATCTAGTCACAGCACAACGTCTCTCTATATATATGGCTTCTCTGGTTCTGCCATCTCCATCGTCGTGTTCAACATCGTCTTCGGCTTCTCTGTTCTCTCGTGGCTCTTTCTGCCACAAGAGTTTCATTTTCAACGAGCCTCGTTCCAGAGTCTCTATTTCTAGCGGCATAAAATGTGATCTTGCTCAACCACTGAATGGAAAGCCTTTTGTGCCCATCCTTAAGGATGGAGTGCTACCGGAGTTCTTGCAGTCCAGACACATGGAGAATGCTGTTAATAGAAGTAATACCAGGCTGAAAATTTTCTCCGGCACTGCAAATCCTACGTTATCTCAGGGAGGTCCCCTGGTATGTGAGGTTTCCTTTTATTCTGCTAGAGCAAGAAACGTGGAAATAGCATGGTACATGGGCCTAAATCTGGGGAAAATCAATATAAAGCGGTTTGCTGACGGTGAAATTTATGTTCAATTGCAAGAGAGTGTTAGGGGGTGTAATGTGTACTTGGTGCAGCCCACCTGCCCTCCAGCTAACGAAAACCTAATGGAGCTTTTAGTAATGATAGATGCATGTAGAAGGGCATCAGCCAAGAATATCACCGCGGTGATCCCATATTTTGGATATGCAAGAGCTGATAGAAAGACTCAAGGCCGTGAATCTATTGCTGCCAAATTAGTAGCAAATCTTATTACTGAAGCAGGCGCAGATCGCGTTCTTGCTTGCGATCTTCATTCTGGGCAGTCCATGGGTTATTTTGATATTCCAGTGGACCATGTATACTGTCAGCCTGTAATTCTTGATTACCTGGCCAGCAAGACATTTAGTTTCAATGATTTGGTTGTCGTCTCACCTGATGTTGGGGGAGTTGCCAGAGCACGTGCTTTTGCCAAAAAATTATCCGATGCGCCTTTAGCAATTGTGGACAAAAGGCGTCATGGGCACAATGTTGCTGAGGTAATGAATCTGATTGGTGATGTTAAGGGAAAAGTTGCAGTGATGGTAGATGACATGATTGACACTGCTGGGACTATTACAAAAGGTGCAGCTCTGTTACACGATGCTGGAGCCAGGGAGGTCTATGCGTGCAGCACTCATGCTGTTTTCAGCCCACCTGCAATTGAGAGGTTGTCGAGCGGCCTGTTTCAAGAGGTGATCATTACAAATACAACTCCTATATCGGACAAGAACTATTTCCCCCAGCTCACTGTTCTTTCTGTAGCCAATCTCTTGGGTGAGACCATATGGCGTGTTCATGACGATTGCTCTGTCAGCAGCATATTCCAATAA

Network for GWHGAAZE006372

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13793.7	Pribosyltran_N	119	222	1.40E-43
PF14572.7	Pribosyl_synth	307	415	2.10E-23

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00948	PRPS, prsA	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Microbial metabolism in diverse environments	map01120
		Carbon metabolism	map01200
		Biosynthesis of amino acids	map01230
		Pentose phosphate pathway	map00030
		Purine metabolism	map00230

Gene Ontology

GO term	Ontology	Name
GO:0009165	biological_process	nucleotide biosynthetic process
GO:0009116	biological_process	nucleoside metabolic process
GO:0009156	biological_process	ribonucleoside monophosphate biosynthetic process
GO:0044249	biological_process	cellular biosynthetic process
GO:0000287	molecular_function	magnesium ion binding
GO:0004749	molecular_function	ribose phosphate diphosphokinase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	11.119
	SRR3591706	second leaf	19.373
	SRR3591707	mature leaf	18.857
	SRR3591708	Shoot apex	22.101
	SRR3591709	Stem	14.816
	SRR3591710	White floral bud	25.465
	SRR3591711	White flower	149.206
	SRR3591712	Green floral bud	16.638
	SRR3591713	Yellow flower	201.020
SRP173429	SRR8316895	Juvenile bud stage	13.272
	SRR8316896	Juvenile bud stage	28.026
	SRR8316897	Juvenile bud stage	11.964
	SRR8316894	Third green stage	8.448
	SRR8316900	Third green stage	21.037
	SRR8316901	Third green stage	23.092
	SRR8316898	Complete white stage	7.292
	SRR8316899	Complete white stage	18.969
	SRR8316903	Complete white stage	12.790
	SRR8316902	Silver flowering stage	74.563
	SRR8316904	Silver flowering stage	116.090
	SRR8316905	Silver flowering stage	55.289
	SRR8316906	Gold flowering stage	289.295
	SRR8316907	Gold flowering stage	229.216
	SRR8316908	Gold flowering stage	449.625
SRP132670	SRR6706286	Control	34.663
	SRR6706287	Light intensity 50%	31.244
	SRR6706288	Light intensity 20%	32.991
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	26.132
	CNS0095593	Slightly white alabastrum(diploid) 2	17.996
	CNS0095594	Slightly white alabastrum(diploid) 3	28.447
	CNS0095595	Whole white alabastrum(diploid) 2	16.327
	CNS0095596	Whole white alabastrum(diploid) 3	18.969
	CNS0095597	Whole white alabastrum(diploid) 4	15.909
	CNS0095598	Silvery flower (diploied) 1	15.592
	CNS0095599	Silvery flower (diploied) 2	22.333
	CNS0095600	Silvery flower (diploied) 3	77.917
	CNS0095601	Golden flower (diploid) 1	24.694
	CNS0095602	Golden flower (diploid) 2	70.926
	CNS0095603	Golden flower (diploid) 3	72.519
	CNS0095604	Slightly white alabastrum(tetraploid) 1	16.692
	CNS0095605	Slightly white alabastrum(tetraploid) 2	14.666
	CNS0095606	Slightly white alabastrum(tetraploid) 3	11.880
	CNS0095607	Whole white alabastrum(tetraploid) 1	13.058
	CNS0095608	Whole white alabastrum(tetraploid) 2	10.989
	CNS0095609	Whole white alabastrum(tetraploid) 3	15.686
	CNS0095610	Silvery flower (tetraploid) 1	312.578
	CNS0095611	Silvery flower (tetraploid) 2	351.463
	CNS0095612	Silvery flower (tetraploid) 3	868.983
	CNS0095613	Golden flower (tetraploid) 1	409.418
	CNS0095614	Golden flower (tetraploid) 2	277.409
	CNS0095615	Golden flower (tetraploid) 3	429.246
CRA001975	CRR073297	Stem 1	29.653
	CRR073298	Stem 2	27.514
	CRR073299	Stem 3	28.494
	CRR073300	Leaf 1	26.966
	CRR073301	Leaf 2	31.552
	CRR073302	Leaf 3	30.699
	CRR073303	Juvenile bud 1	23.435
	CRR073304	Juvenile bud 2	17.386
	CRR073305	Juvenile bud 3	24.183
	CRR073306	Third green 1	257.135
	CRR073307	Third green 2	184.579
	CRR073308	Third green 3	194.382
	CRR073309	Second white 1	336.184
	CRR073310	Second white 2	320.144
	CRR073311	Second white 3	350.200
	CRR073312	Silver flowering 1	300.239
	CRR073313	Silver flowering 2	296.150
	CRR073314	Silver flowering 3	309.268
	CRR073315	Gold flowering 1	32.407
	CRR073316	Gold flowering 2	47.276
	CRR073317	Gold flowering 3	29.642
	CRR073318	Tawny withering 1	29.379
	CRR073319	Tawny withering 2	55.546
	CRR073320	Tawny withering 3	15.982